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Fix use of ActiveRecord::Base in RepositoryCheck

What does this MR do and why?

Fixes RepositoryCheck to call methods on Project instead of ActiveRecord::Base because ActiveRecord::Base may not be the correct database due to database decomposition.

See #350651 (closed)

MR acceptance checklist

This checklist encourages us to confirm any changes have been analyzed to reduce risks in quality, performance, reliability, security, and maintainability.

Related to #350651 (closed)

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