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Use shallow cloning in Duo workflow jobs by default

What does this MR do and why?

Use shallow cloning in Duo workflow jobs initiated via API by default to speed up workflow execution.

Developers can still do a full clone if needed.

References

Related to #572184 (closed)

Supersedes !207454 (closed)

This is a variation of what was proposed in !207454 (comment 2806970755).

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Edited by Wanderson Policarpo

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