Enable `group_level_dependencies_filtering` by default

What does this MR do and why?

Enable group_level_dependencies_filtering by default

The flag was enabled 3 days ago and the feature is stable.

94.08% is below the target success rate. The errors are statement timeouts, which will be addressed with &12371.

MR acceptance checklist

Please evaluate this MR against the MR acceptance checklist. It helps you analyze changes to reduce risks in quality, performance, reliability, security, and maintainability.