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Draft: Stop allowing stubbed legacy disk paths

James Fargher requested to merge stop_allowing_stubbed_legacy_paths into master

What does this MR do and why?

#375254 (closed)

This stubbing was allowing tests to circumvent the allow_disk_acces protection in specs. All these physical filesystem accesses to gitaly have to be removed as they are not supported for gitaly cluster or remote gitaly servers.

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