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Stop accessing filesystem in update repository_storage service specs

What does this MR do and why?

#375254 (closed)

The assertions that repositories do not exist here were not testing anything because all repository operations, including remove repository, are mocked.

MR acceptance checklist

This checklist encourages us to confirm any changes have been analyzed to reduce risks in quality, performance, reliability, security, and maintainability.

Edited by James Fargher

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