Improve docker timeouts

What does this MR do?

Tries to resolve the state of #2408 (closed).

Most of the errors that the user sees are related to Docker API taking a long time to process requests. For example, any I/O expensive operation can make Docker Engine to not be responsive fast enough. Increasing timeouts gives more room for Docker Engine.

Does this MR meet the acceptance criteria?

• Documentation created/updated
• Tests
  • Added for this feature/bug
  • All builds are passing
• Branch has no merge conflicts with master (if you do - rebase it please)

What are the relevant issue numbers?

cc @tmaczukin

Related to #2408 (closed)