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Update clear-docker-cache script to keep cache volumes

Arran Walker requested to merge 30876-gitlab-runner-upgrade-removes-all-cache-volumes into main

What does this MR do?

Updates upgrade script to call prune rather than prune-volumes.

Why was this MR needed?

Removing volumes is unexpected when upgrading runner.

What's the best way to test this MR?

What are the relevant issue numbers?

Closes #30876 (closed)

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