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Ensure to clean previous sparse-checkout config

What does this MR do?

Remove sparse-checkout config

Why was this MR needed?

Having it affect the checkout content of the working copy

What's the best way to test this MR?

Run a job in a dedicated runner (with repo cache enabled) that use git sparse-checkout init --cone (which will only checkout root directory). Then with the same runner, run another job that look for file under a sub directory.

What are the relevant issue numbers?

None

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