Move update_project_counter_caches? out of issue and merge request

What does this MR do?

Moves update_project_counter_caches? out of issue and merge request

Does this MR meet the acceptance criteria?

• Changelog entry added, if necessary
• [n/a] Documentation created/updated
• [n/a] API support added
• [n/a] Tests added for this feature/bug
• Review
  • Has been reviewed by UX
  • Has been reviewed by Frontend
  • Has been reviewed by Backend
  • Has been reviewed by Database
• Conform by the merge request performance guides
• Conform by the style guides
• Squashed related commits together
• [n/a] Internationalization required/considered

What are the relevant issue numbers?

Closes #39602 (closed)