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Include --root option to FindChangedPaths RPC

Igor Drozdov requested to merge id-include-root-to-find-changed-paths into master

Overview

According to https://git-scm.com/docs/git-diff-tree:

--root
When --root is specified the initial commit will be shown as a big creation event. This is equivalent to a diff against the NULL tree.

This MR specifies --root option to contain the changes for the initial commit as well.

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