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Unify transaction manager's references assertion

Unify transaction manager's references assertion

In transaction manager's test suite, there are two references assertion helpers: RepositoryState.References and RepositoryState.PackedRefs. Both of them are somehow overlapped. The later helper can assert more information including whether a ref is packed or loosed or shadowed. Another advantage of using a hashmap assertion is insignificant ordering. . There is no need to keep both of them. This MR unify them into one.

Edited by Quang-Minh Nguyen

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