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log: Refactor to stop using standard logger (pt.1)

Patrick Steinhardt requested to merge pks-log-stop-using-standard-logger-pt1 into master

This MR is the first part to stop using the standard logger in favor of the logger configured in internal/log. It replaces all use of logrus.(Info,Error,Warn,Warning,Debug,Fatal) and logrus.StandardLogger() with internal/log.Default() or ctxlogrus.Extract().

This MR does not yet address usage of logrus.With(Error,Context,Field,Fields,Time) or the log packages. These will be addressed in follow-up merge requests.

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