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localrepo: Add ability to read and write trees in memory

John Cai requested to merge jc/tree-entry-as-tree into master

This MR is a slew of improvements to tree functions in the localrepo package. Namely, it adds an Entries member to the TreeEntry struct so it creates a new data structure that we can operate on in memory before we write the changes to the tree into Git.

These commits have been broken out from !5783 (closed) and were originally reviewed as part of !5642 (merged)

Edited by John Cai

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