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proto: Drop root tree ID from TreeEntry message

Patrick Steinhardt requested to merge pks-tree-entry-remove-root-oid into master

In 9eba19b5 (proto: Deprecate root_oid field in the TreeEntry message, 2023-03-15) we have deprecated the root_oid field in the tree entry message. This field was expensive to compute and requires us to spawn a separate process. Given that there are no downstream users of the root tree ID this is a complete waste of compute resources.

Remove the field.

Closes #4823 (closed).

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