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Fix issues with replication of optimizing RPCs

Patrick Steinhardt requested to merge pks-coordinator-cleanup-rpcs into master

This MR two bugs and three performance issues with our current replication logic for idempotent optimizing RPCs:

  1. We didn't replicate the prune parameter of GC calls.
  2. We didn't replicate the all_refs parameter of PackRefs calls.
  3. We didn't special-case WriteCommitGraph, OptimizeRepository and MidxRepack.

Relates to https://gitlab.com/gitlab-com/gl-infra/production/-/issues/5044, #3670 (closed).

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