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fix: remove recreated files

Bob Van Landuyt requested to merge bvl/remove-recreated-files into main

fix: remove recreated files

This adds a migration script to run on each migration.

The script uses git to list all files that were added in a copier update. Then it check the git history to see if the file was previously deleted, if it was we remove it again so we don't re-add it.

Fixes #3

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