Draft: Auto-update dependencies

• Updated poetry.lock

Some poetry dependencies could not be updated:

charset-normalizer 3.0.0  3.3.2  The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet.
flask              2.3.3  3.0.3  A simple framework for building complex web applications.
flywheel-bids      1.2.14 1.2.15 Flywheel BIDS Client
flywheel-sdk       17.8.0 18.3.0 Flywheel SDK
future             0.18.3 1.0.0  Clean single-source support for Python 3 and 2
fw-storage         3.2.1  3.4.2  Unified storage interface.
lxml               4.9.4  5.2.2  Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API.
pathvalidate       2.5.2  3.2.0  pathvalidate is a Python library to sanitize/validate a string such as filenames/file-paths/etc.
portalocker        1.7.1  2.8.2  Wraps the portalocker recipe for easy usage
protobuf           4.25.3 5.27.1 
pydicom            2.1.2  2.4.4  Pure python package for DICOM medical file reading and writing
pytest             7.4.4  8.2.2  pytest: simple powerful testing with Python
pytest-cov         4.0.0  5.0.0  Pytest plugin for measuring coverage.
pytz               2023.4 2024.1 World timezone definitions, modern and historical
sqlalchemy         1.3.24 2.0.30 Database Abstraction Library
urllib3            2.0.7  2.2.1  HTTP library with thread-safe connection pooling, file post, and more.

• Updated requirements.txt
• Updated .pre-commit-config.yaml
• Updated .gitlab-ci.yml