FitMultiCell 0.1.0

Documentation

• Enhance documentations
• Add additional example (Cell motility)

summary statistics

• User can define his own summary statistics, use one of the existing ones, or he can treat Morpheus output as a summary statistics

Morpheus interface

• Enable changing other attributes besides value in a backward-compatible way.
• Ensure the existence and uniqueness of parameters in the Morpheus model.
• the possibility to ignore any unwanted column from Morpheus logger file such as cell.id or time. This is helpful for the case when Morpheus output is directly used as a summary statistics

Visualization

• Visualization routine work directly with pyABC.History, thus, no need for an extra effort.
• Enhance the fitting plot
• The possibility of producing fitting plots as a gif for the different generations t
• enable the user to define the limits for the y-axis in order to have a fixed axis for the different generations t

General

• Enable the user to define the space for the parameter space (the current options are: linear, log10, log2). That can be defined when defining the model object through the argument par_scale