... | ... | @@ -21,11 +21,11 @@ If no output directory has been set using the `--output` flag, then the folder t |
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├── supermatrix_stats.csv
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├── input_alignments_stats.csv
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├── supermatrix.fas
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├── occupancy_matrix.png
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├── output_alignments_stats.csv
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├── otu_stats.csv
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├── phylopypruner.log
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├── paralogy_freq_plot.png*
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├── occupancy_matrix.png*
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└── output_alignments/
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├── 1_pruned.fas
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├── 2_pruned.fas
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... | ... | |