... | ... | @@ -80,6 +80,20 @@ Statistics for each _individual_ output alignment are stored into `output_alignm |
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## OTU statistics <a name="otu_statistics"></a>
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Statistics for individual OTUs are stored into `otu_stats.csv`.
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1. _otu_ – The name of the OTU under study.
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2. _paralogyFrequency_ – The paralogy frequency value for a specific OTU.
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3. _timesAboveDivergenceThreshold_ – The number of times that a certain OTU was cut of from individual alignments due to have a ratio of pairwise distances above the divergence threshold.
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| otu | paralogyFrequency | timesAboveDivergenceThreshold |
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|------|-------------------|-------------------------------|
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| PCAL | 30.4 | 13 |
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| SAGI | 0 | 4 |
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| PCER | 10.3 | 33 |
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| PARC | 39.2 | 0 |
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| BNER | 25.3 | 1 |
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## Log file <a name="log_file"></a>
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The log file stores information about time and date when the analysis was made, input data, settings, supermatrix statistics in a readable format, as well as the time that the analysis took.
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