[Question] How scores_cutoff and lengths_cutoff are used in backend?
I'm looking through the source doe but haven't found what I was looking for in my search: https://gitlab.com/ezlab/busco/-/blob/master/src/busco/busco_tools/hmmer.py. Each BUSCO database comes with scores_cutoff
and lenghts_cutoff
for each HMM. How are these filtered?
Which field from HMMSearch is used for the length cutoff? Is the "full sequence" or "best domain" used for the scores cutoff?