What's the difference between compleasm run and busco --miniprot
Hello,
I'm assessing genome completeness from a de novo genome assembly. When I run BUSCO --miniprot and compleasm there is a slight different between the results. Perhaps Do you know what's the reason for this?
dataset eurotiales_odb10
Busco result: C:95.8%[S:95.4%,D:0.4%],F:0.3%,M:3.9%,n:4191,E:35.9%
4012 Complete BUSCOs (C) (of which 1441 contain internal stop codons) | 3997 Complete and single-copy BUSCOs (S) | 15 Complete and duplicated BUSCOs (D) | 11 Fragmented BUSCOs (F) | 168 Missing BUSCOs (M) | 4191 Total BUSCO groups searched |
command used: busco -f --miniprot -c 32 -l eurotiales_odb10 -m genome -i assembly.fasta -o out_busco_miniprot
Compleasm result:
S:97.18%, 4073 D:0.12%, 5 F:0.12%, 5 I:0.00%, 0 M:2.58%, 108 N:4191
command used: compleasm run -t 32 -l eurotiales_odb10 -a assembly.fasta -o out_compleasm
Thank you very much