Issue with Metaeuk log file
This is the code I ran: % busco -i /pvol/analysis2/3.trinity_out.Trinity.fasta -l eukaryota_odb10 -o busco_output -m transcriptome -f --cpu 14 &>logfile_busco.log
this is the error that is at the beginning of my log file: 'list_datasets': '==SUPPRESS==', 'long': False, 'metaeuk_parameters': None, 'metaeuk_rerun_parameters': None, 'mode': 'transcriptome', 'offline': False, 'out': 'busco_output', 'out_path': None, 'quiet': False, 'restart': False, 'scaffold_composition': False, 'tar': False, 'update-data': False, 'use_augustus': False, 'use_miniprot': False, 'version': '==SUPPRESS=='}} 2023-12-19 11:54:23 INFO:busco.BuscoRunner Input file is /pvol/analysis2/3.trinity_out.Trinity.fasta 2023-12-19 11:54:23 DEBUG:busco.analysis.BuscoAnalysis Check all required tools are accessible... 2023-12-19 11:54:23 DEBUG:busco.analysis.BuscoAnalysis Checking dataset for HMM profiles 2023-12-19 11:54:26 INFO:busco.analysis.BuscoAnalysis Running BUSCO using lineage dataset eukaryota_odb10 (eukaryota, 2020-09-10) 2023-12-19 11:54:26 DEBUG:busco.busco_tools.base Tool: metaeuk 2023-12-19 11:54:26 DEBUG:busco.busco_tools.base Version: 6.a5d39d9 2023-12-19 11:54:26 INFO:busco.busco_tools.Toolset Running 1 job(s) on metaeuk, starting at 12/19/2023 11:54:26 2024-01-04 16:26:55 DEBUG:busco.busco_tools.Toolset cmd call: metaeuk easy-predict --threads 14 /pvol/analysis2/3.trinity_out.Trinity.fasta /pvol/analysis2/4_transcriptome_assembly_quality_assessment/busco_downloads/lineages/eukaryota_odb10/refseq_db.faa /pvol/analysis2/4_transcriptome_assembly_quality_assessment/busco_output/run_eukaryota_odb10/metaeuk_output/initial_results/3.trinity_out.Trinity.fasta /pvol/analysis2/4_transcriptome_assembly_quality_assessment/busco_output/run_eukaryota_odb10/metaeuk_output/tmp --max-intron 130000 --max-seq-len 160000 --min-exon-aa 15 --max-overlap 15 --min-intron 5 --overlap 1 -s 4.5 2024-01-04 16:26:55 CRITICAL:busco.BuscoRunner Unhandled exception occurred: multiprocessing.pool.RemoteTraceback: """ Traceback (most recent call last): File "/pvol/miniconda3/lib/python3.10/multiprocessing/pool.py", line 125, in worker result = (True, func(*args, **kwds)) File "/pvol/miniconda3/lib/python3.10/multiprocessing/pool.py", line 48, in mapstar return list(map(*args)) File "/pvol/miniconda3/lib/python3.10/site-packages/BUSCO-5.5.0-py3.10.egg/busco/busco_tools/Toolset.py", line 196, in run_job job.run() File "/pvol/miniconda3/lib/python3.10/site-packages/BUSCO-5.5.0-py3.10.egg/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/pvol/miniconda3/lib/python3.10/site-packages/BUSCO-5.5.0-py3.10.egg/busco/busco_tools/Toolset.py", line 67, in run with open(self.job_outlogger, "wb") as f_out: FileNotFoundError: [Errno 2] No such file or directory: '/pvol/analysis2/4_transcriptome_assembly_quality_assessment/busco_output/logs/metaeuk_run1_out.log' """
The above exception was the direct cause of the following exception:
Traceback (most recent call last): File "/home/ubuntu/.local/lib/python3.10/site-packages/BUSCO-5.5.0-py3.10.egg/busco/BuscoRunner.py", line 160, in run File "/home/ubuntu/.local/lib/python3.10/site-packages/BUSCO-5.5.0-py3.10.egg/busco/BuscoRunner.py", line 498, in run_analysis File "/home/ubuntu/.local/lib/python3.10/site-packages/BUSCO-5.5.0-py3.10.egg/busco/analysis/GenomeAnalysis.py", line 395, in run_analysis File "/home/ubuntu/.local/lib/python3.10/site-packages/BUSCO-5.5.0-py3.10.egg/busco/analysis/GenomeAnalysis.py", line 453, in _run_metaeuk File "/home/ubuntu/.local/lib/python3.10/site-packages/BUSCO-5.5.0-py3.10.egg/busco/busco_tools/metaeuk.py", line 450, in run File "/home/ubuntu/.local/lib/python3.10/site-packages/BUSCO-5.5.0-py3.10.egg/busco/busco_tools/Toolset.py", line 185, in run_jobs File "/pvol/miniconda3/lib/python3.10/multiprocessing/pool.py", line 367, in map return self._map_async(func, iterable, mapstar, chunksize).get() File "/pvol/miniconda3/lib/python3.10/multiprocessing/pool.py", line 774, in get raise self._value FileNotFoundError: [Errno 2] No such file or directory: '/pvol/analysis2/4_transcriptome_assembly_quality_assessment/busco_output/logs/metaeuk_run1_out.log'
2024-01-04 16:26:55 ERROR:busco.BuscoRunner [Errno 2] No such file or directory: '/pvol/analysis2/4_transcriptome_assembly_quality_assessment/busco_output/logs/metaeuk_run1_out.log' 2024-01-04 16:26:55 DEBUG:busco.BuscoRunner [Errno 2] No such file or directory: '/pvol/analysis2/4_transcriptome_assembly_quality_assessment/busco_output/logs/metaeuk_run1_out.log'