augustus is not executable
Hi,
I've been running BUSCO (v. 4.0.6) with the following command:
export BUSCO_CONFIG_FILE=$HOME/busco/config/myconfig.ini
export AUGUSTUS_CONFIG_PATH=$HOME/miniconda3/pkgs/augustus-3.3-boost1.64_bamtools2.4.1_0/config
busco -i HC20_fidiobia_scaffolds.fasta -o HC20_fidiobia_scaffolds \
-c 24 -m genome --long --out HC20_fidiobia_hymenoptera_odb10
but the --long option never truly runs (finishes immediately) and produces the following error in the optimize_augustus.pl_err.log file despite never throwing an error in the busco log file (attached file).
optimize_augustus.pl_err.log:
which: no augustus in (/usr/local/torque-6.1.3/bin:/usr/local/torque-6.1.3/sbin:/usr/lib64/qt-3.3/bin:/home/lahey.18/perl5/bin:/opt/moab/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/home/lahey.18/.local/bin:/home/lahey.18/bin)
augustus is not executable. Please add the directory which contains the executable augustus to the PATH environment variable or specify the path with --aug_exec_dir. at /home/lahey.18/miniconda3/bin/optimize_augustus.pl line 254.
Any insight into what's going on would be greatly appreciated. Thank you!
Zach