bioinformatics
Projects with this topic
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Manikineko PYBIDK An Python Toolkit for Handling Gentic Information
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Environment-dependent evolution of digital organisms simulator.
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DuploMap is designed to improve precision and recall of long-read alignments in segmental duplications.
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This project includes python scripts with examples used for the below article in GBE. It is also archived on Figshare (https://doi.org/10.6084/m9.figshare.17111693).
Red algal plastids exhibit large genome size variation, especially in the recently described subphylum Proteorhodophytina. By contrast, their mitochondrial genomes remain unexplored. Here, we sequenced, assembled, and analyzed new plastid and mitochondrial genomes of 25 species of red microalgae. We uncovered new cases of genome size expansion in plastids and mitochondria, in both cases associated with group II intron proliferation. The phylogenomic analysis supported that these expansions occurred several times independently. URL: https://doi.org/10.1093/gbe/evac037
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Snakemake RNAseq processing pipeline (STAR or Salmon) via a SLURM cluster
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Custom scripts or projects.
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Package for the building of Protein-Protein/DNA Complexes in Python
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Bioinformatics toolkit, written in Python and PyQT with Rust plugin system.
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rebelCoder's Bioinformatics course in Python: Rosalind challenges YouTube channel: https://t.ly/RdzG3
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This repository contains files and projects created from different Coursera courses and Rosalind platform.
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acid is not base. ac.json is not a database. this is the assay coordinate pipeline base library. a pipeline gathered around the acjson file format. a pipeline for bioinformatics data analysis.
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Fungal Secreted Proteins (or Secretome) Annotation Pipeline
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Protein-Protein Docking Scoring function.
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Fungal Secreted Proteins (or Secretome) Predictor Pipeline
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auxiliary tools for bioinformatic pipelines and sequencing data manipulation
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Python toolbox implementing LASSIM (Large Scale Simulating Modelling), a new simulation-based integrative framework for GRN inference.
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Some Bioinformatics example about dna, genes and other.
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