Draft: Andrew S main commits post 1.2.4

commit 0e2b2f1c Author: Rob Cosgrove r.cosgrove@griffith.edu.au Date: Mon Jul 31 20:48:23 2023 +1000

dont allow fail of main img build

commit e5024539 Merge: a32970f6 8d24d3d5 Author: Robert Cosgrove r.cosgrove@griffith.edu.au Date: Mon Jul 24 03:10:18 2023 +0000

Merge branch 'constraint_reverted' into 'main'

Update EC_SDM_geoconstrained.R reverted

See merge request ecocommons-australia/ecocommons-platform/ecocommons!22

commit 8d24d3d5 Author: Sean Haythorne sean.haythorne@unimelb.edu.au Date: Mon Jul 24 00:51:31 2023 +0000

Update EC_SDM_geoconstrained.R

commit a32970f6 Author: Rob Cosgrove r.cosgrove@griffith.edu.au Date: Tue Jul 18 17:19:40 2023 +1000

fix wrong branch

commit e59e8bb4 Author: Rob Cosgrove r.cosgrove@griffith.edu.au Date: Tue Jul 18 17:17:36 2023 +1000

ci fix

commit c3dadb83 Author: Rob Cosgrove r.cosgrove@griffith.edu.au Date: Tue Jul 18 17:16:46 2023 +1000

syntax fix

commit b3e2ba23 Author: Rob Cosgrove r.cosgrove@griffith.edu.au Date: Tue Jul 18 17:16:02 2023 +1000

and for main

commit 4b8b6a38 Author: Rob Cosgrove r.cosgrove@griffith.edu.au Date: Tue Jul 18 17:13:52 2023 +1000

add experimental sdm-func trigger

commit be031dd1 Author: Rob Cosgrove r.cosgrove@griffith.edu.au Date: Tue Jul 18 16:42:24 2023 +1000

rework var names to be less terrible

commit bcc6e4c1 Author: Rob Cosgrove r.cosgrove@griffith.edu.au Date: Tue Jul 18 16:31:23 2023 +1000

update readme on new build

commit 0415eb4e Author: Rob Cosgrove r.cosgrove@griffith.edu.au Date: Tue Jul 18 15:40:54 2023 +1000

Make tagged builds work properly

commit c9f28800 Author: Andrew Schwenke andrew.schwenke@gmail.com Date: Thu May 25 08:33:52 2023 +0000

Update Dockerfile

commit 16eed4c4 Merge: dec4259a 9f4e6bd2 Author: Robert Cosgrove r.cosgrove@griffith.edu.au Date: Thu May 25 07:49:07 2023 +0000

Merge branch 'basic_pipeline_build' into 'main'

Add simple build

See merge request ecocommons-australia/ecocommons-platform/ecocommons!21

commit 9f4e6bd2 Author: Robert Cosgrove r.cosgrove@griffith.edu.au Date: Thu May 25 07:49:07 2023 +0000

Add simple build

commit dec4259a Author: Robert Cosgrove r.cosgrove@griffith.edu.au Date: Thu May 25 07:48:17 2023 +0000

Update Dockerfile. ALA potions ref master -> main

commit 3a710f23 Merge: 4d9d0a14 5f97a593 Author: Robert Cosgrove r.cosgrove@griffith.edu.au Date: Thu May 25 02:47:03 2023 +0000

Merge branch 'sean' into 'main'

Update EC_SDM_geoconstrained.R with refreshed fix

See merge request ecocommons-australia/ecocommons-platform/ecocommons!20

commit 5f97a593 Author: Sean Haythorne sean.haythorne@unimelb.edu.au Date: Wed May 24 23:06:48 2023 +0000

Update EC_SDM_geoconstrained.R scope sf_use_s2

commit 267a5a34 Author: Sean Haythorne sean.haythorne@unimelb.edu.au Date: Wed May 24 22:55:40 2023 +0000

Update EC_SDM_geoconstrained.R library import

commit 5c7249a2 Merge: c311eb49 4d9d0a14 Author: Sean Haythorne sean.haythorne@unimelb.edu.au Date: Wed May 24 06:20:12 2023 +0000

Merge branch 'main' into 'sean'

# Conflicts:
#   R/EC_SDM_geoconstrained.R

commit c311eb49 Author: Sean Haythorne sean.haythorne@unimelb.edu.au Date: Wed May 24 06:13:54 2023 +0000

Update EC_SDM_geoconstrained.R refreshed

commit 4d9d0a14 Author: Sean Haythorne sean.haythorne@unimelb.edu.au Date: Wed May 24 06:11:07 2023 +0000

Revert "Update EC_SDM_geoconstrained.R with fix for large expanse"

This reverts commit 9c1533045fb5a3572b4d0de4a3ef9d1bd0e19eda

commit 9c153304 Author: Sean Haythorne sean.haythorne@unimelb.edu.au Date: Wed May 24 06:03:05 2023 +0000

Update EC_SDM_geoconstrained.R with fix for large expanse

commit fc97d7ed Author: Andrew Schwenke andrew.schwenke@gmail.com Date: Wed May 10 02:53:28 2023 +0000

Update NEWS.md

commit 23e3cc80 Author: Andrew S andrew.schwenke@gmail.com Date: Mon Apr 17 23:59:41 2023 +1000

fix rf

commit beb6b494 Author: Andrew S andrew.schwenke@gmail.com Date: Mon Apr 17 23:17:51 2023 +1000

check

commit b66835f6 Merge: 8a1e8cb0 64a20777 Author: Martin Westgate martinjwestgate@gmail.com Date: Mon Apr 17 01:06:38 2023 +0000

Merge branch 'hotfix' into 'main'

hotfixes

See merge request ecocommons-australia/ecocommons-platform/ecocommons!19

commit 64a20777 Author: Andrew S andrew.schwenke@gmail.com Date: Mon Apr 17 08:25:20 2023 +1000

changes

commit 32c41a61 Author: Andrew S andrew.schwenke@gmail.com Date: Sun Apr 16 23:33:22 2023 +1000

Update EC_modelling_maxent.R

commit de36885a Author: Andrew S andrew.schwenke@gmail.com Date: Sun Apr 16 22:55:18 2023 +1000

test deepcopy

commit 38cd2141 Author: Andrew Schwenke andrew.schwenke@gmail.com Date: Sat Apr 15 03:22:25 2023 +0000

Update file EC_raster_stack.R

commit 628560a9 Author: Andrew Schwenke andrew.schwenke@gmail.com Date: Sat Apr 15 03:01:30 2023 +0000

Update file EC_modelling_maxent.R

commit fa40e949 Author: Andrew S andrew.schwenke@gmail.com Date: Fri Apr 14 13:33:13 2023 +1000

testing fix still

commit 17abebdb Author: Andrew S andrew.schwenke@gmail.com Date: Fri Apr 14 11:50:33 2023 +1000

Update EC_modelling_maxent.R

hotfix segfault error

commit 5de016c4 Author: Andrew S andrew.schwenke@gmail.com Date: Fri Apr 14 11:16:16 2023 +1000

changes

- test temp hack fix to crop layers before resampling
- messy, full re-write in progress dev branch
- allow us to run categorical fine res fast with no unconstrained predictions until improved front end for model region predict region etc
- hotfix maxent check, move convert stack into the check, to skip with cat layer detected

commit 6bb3d9da Author: Andrew S andrew.schwenke@gmail.com Date: Thu Apr 13 19:20:23 2023 +1000

maxent fix

- fix bg point generation for maxent but needs further monitoring
- new pres/abs plot + associated test
- cc bugfix restore gbm switch which was accidentally deleted :S