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Output cleanup

R requested to merge output-cleanup into master

This is a replacement of a previous incorrect merge request for cleaning up/simplifying output.

Here is link to the associated issue thread, with acceptance criteria: https://gitlab.com/dprl/MathSeer-extraction-pipeline/-/issues/16

At Matt's request, in the updated output-cleanup branch, we now have:

  • Updated README, with indication to install GraphViz and libenchantdev
  • Change single example case in Makefile to make 1-example.

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