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ENH: Use map() for calculating each site map in trans matrix

Alexander Tygesen requested to merge trans_matrix_map into master

Using list(map()) is slightly more efficient than appending to the TM each iteration. This MR adds a helper function which calculates the site mappings for each atom in the template, and then maps over the entire template. Avoids unnecessary .append() calls.

Edited by Alexander Tygesen

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