Update joboptions for relion back compatibility

The pipeliner subjob versions of relion jobs have fewer joboptions compared to relion jobs, but some of the joboptions that were removed are needed if the file is going to be used to launch a job in relion

The missing joboptions are now added in a new function in the PipelinerJob add_relion_joboptions(). This is called only when writing a job.star file or run.job file so the resulting files will be Relion compatible