Delete atoms in atomap
I am using atomap to find atoms for a rectangular atomic structure STEM image. So I always have some extra lines of atoms. My questions are:
- I tried to delete atoms by using am.add_atoms_with_gui. However, it seems very difficult to remove atoms by clicking the mouse. I must click exactly at the center of the red dots that I want to remove. Otherwise, it will add a dots instead of removing. And I cannot undo any remove/add process. Is there a better way to remove atoms?
- Since I actually have many dots to remove due to a rectangular structure instead of a cubic one. The extra dots are on atoms with a weaker intensity than the atoms I want to select. Is there a way to set intensity threshold in am.get_feature_separation function so this function can more accurately select desired atoms. Thanks.