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Resolve "Support bgzipped vcf files"

Øyvind Evju requested to merge 2142-support-bgzipped-vcf-files into dev

Description

Added support for bgzipped vcf files.

Related issues

Notes to review (code/docs/QA)

Added a single commit with all testdata compressed. However, I will revert this commit once all tests pass, to avoid unnecessary bloating of the repo. We're anyways moving all testdata to separate repo (!694 (merged)).

Tests

General

  • Tests have been added that prove my fix is effective or that my feature works
  • Related tests have been modified/removed

Hypothesis testing:

  • Soak testing has been done
  • Distribution between positive / negative cases has been checked

Database

  • Includes changes to database schema
  • Includes necessary database migrations

Configuration

  • Includes changes to configuration
  • Includes configuration migration instructions in documentation

Closes #2142 (closed)

Edited by Øyvind Evju

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