Resolve "Support new format of genepanels"

Description

• Replaced all gene panels with output from new gene panel builder
• Changed all version naming from v01 to v01.0
• Inheritance from transcript takes presedence over inheritance from phenotype. Modified code in queries.py, genepanelOverview.js, genepanel.js to accomodate this.
• Added columns inheritance and source to transcript table
• Replaced unique constraint on inheritance table (was: transcript_name) with (transcript_name, inheritance)
• Some typing. Replaced os.path with pathlib.Path in deposit_testdata.py, deposit_genepanel.py and cli/commands/deposit/deposit.py
• Update click to get support for pathlib.Path type options
• Remove unused file ops/test/report/report-fixture-sample-1-and-2.sql

TODO:

• Update preimport.py to output new format gene panels

Related issues

Notes to review (code/docs/QA)

The majority of the changes are version change (v01->v01.0).

IMPORTANT This can not be released until new gene panel builder is released

Tests

General

• Tests have been added that prove my fix is effective or that my feature works
• Related tests have been modified/removed

Hypothesis testing:

• Soak testing has been done (of test_inheritancemodelfilter.py)
• Distribution between positive / negative cases has been checked

Database

• Includes changes to database schema
• Includes necessary database migrations

Configuration

• Includes changes to configuration
• Includes configuration migration instructions in documentation

Closes #238 (closed)