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Draft: Resolve "Support new format of genepanels"

Francesco Bettella requested to merge 238-support-newer-format-of-genepanels into dev

Description

Introducing:

  • new versions of test gene panel files
  • HGMD transcript annotation
  • configured gene transcripts sources
  • configured inheritance modes from gene transcripts file

Removing:

  • ensembl transcript

Related issues

Closes #238 (closed)

Notes to review (code/docs/QA)

I'm not sure how to address the items below. maybe we should process this merge request more interactively.

Tests

General

  • Tests have been added that prove my fix is effective or that my feature works
  • Related tests have been modified/removed:
    • test_inconsistent_ensembl_transcript was deactivated

Hypothesis testing:

  • Soak testing has been done
  • Distribution between positive / negative cases has been checked

Database

  • Includes changes to database schema
  • Includes necessary database migrations

Configuration

  • Includes changes to configuration
  • Includes configuration migration instructions in documentation

Merge checklist

  • Self-review of code has been performed.
  • Feature review and validation against specification has been performed (if applicable). Apply label: QAdone
  • Need for documentation has been evaluated and, if necessary, updated. Apply label: docsdone
  • Code and implementation has been reviewed by other core developer (including any changes based on initial review). Apply label: code reviewdone
Edited by Francesco Bettella

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