Draft: Resolve "Support new format of genepanels"
Description
Introducing:
- new versions of test gene panel files
- HGMD transcript annotation
- configured gene transcripts sources
- configured inheritance modes from gene transcripts file
Removing:
- ensembl transcript
Related issues
Closes #238 (closed)
Notes to review (code/docs/QA)
I'm not sure how to address the items below. maybe we should process this merge request more interactively.
Tests
General
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Tests have been added that prove my fix is effective or that my feature works -
Related tests have been modified/removed: -
test_inconsistent_ensembl_transcript
was deactivated
-
Hypothesis testing:
-
Soak testing has been done -
Distribution between positive / negative cases has been checked
Database
-
Includes changes to database schema -
Includes necessary database migrations
Configuration
-
Includes changes to configuration -
Includes configuration migration instructions in documentation
Merge checklist
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Self-review of code has been performed. -
Feature review and validation against specification has been performed (if applicable). Apply label: QAdone -
Need for documentation has been evaluated and, if necessary, updated. Apply label: docsdone -
Code and implementation has been reviewed by other core developer (including any changes based on initial review). Apply label: code reviewdone
Edited by Francesco Bettella