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WIP: 56 Minimal support for CNV analysis

Tom requested to merge 56-cnv-main into dev

Description

https://gitlab.com/alleles/ella/-/issues/56

Basic import of CNVs, DEL and DUP into ELLA database. Basic visualization in sidebar and igv.js support of wgs tracks for cram and bigWig in addition to bam.

Related issues

#56 (closed)

[Describe changes/solution; problem description should be in issue]

Related issues

Notes to review (code/docs/QA)

Tests

General

  • Tests have been added that prove my fix is effective or that my feature works
  • Related tests have been modified/removed

Hypothesis testing:

  • Soak testing has been done
  • Distribution between positive / negative cases has been checked

Database

  • Includes changes to database schema
  • Includes necessary database migrations

Configuration

  • Includes changes to configuration
  • Includes configuration migration instructions in documentation

Merge checklist

  • Self-review of code has been performed.
  • Feature review and validation against specification has been performed (if applicable). Apply label: QAdone
  • Need for documentation has been evaluated and, if necessary, updated. Apply label: docsdone
  • Code and implementation has been reviewed by other core developer (including any changes based on initial review). Apply label: code reviewdone

Closes #56 (closed)

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