Resolve "Configurable prefiltering"
Description
- Add possibility to select which prefilters to apply
- Add possibility to have multiple sets of prefilters that are "OR'd"
- Add prefilter "low_mapping_quality" for variants with MQ<20.
- Fixed so that first variant is not always considered "nearby"
Related issues
Notes to review (code/docs/QA)
Tests
General
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Tests have been added that prove my fix is effective or that my feature works -
Related tests have been modified/removed
Hypothesis testing:
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Soak testing has been done -
Distribution between positive / negative cases has been checked
Database
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Includes changes to database schema -
Includes necessary database migrations
Configuration
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Includes changes to configuration -
Includes configuration migration instructions in documentation
Merge checklist
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Self-review of code has been performed. -
Feature review and validation against specification has been performed (if applicable). Apply label: QAdone -
Need for documentation has been evaluated and, if necessary, updated. Apply label: docsdone -
Code and implementation has been reviewed by other core developer (including any changes based on initial review). Apply label: code reviewdone
Closes #268 (closed)
Edited by Morten C. Eike