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Resolve "Improve .analysis-file for import"

Øyvind Evju requested to merge 182-improve-analysis-file into dev

Description

Added a module for reading .analysis-files with all relevant metadata related to an analysis. This is made backward-compatible with current .analysis-files, by converting these on initial load.

The implemented solution supports the following inputs:

  • New format .analysis files (see #182 (closed))
  • Folder (will look for a .analysis file, alternatively look for .vcf- and .ped-files in the folder)
  • vcf-file
  • None (sets default values only)

Related issues

#182 (closed)

Notes to review (code/docs/QA)

Tests

General

  • Tests have been added that prove my fix is effective or that my feature works
  • Related tests have been modified/removed

Hypothesis testing:

  • Soak testing has been done
  • Distribution between positive / negative cases has been checked

Database

  • Includes changes to database schema
  • Includes necessary database migrations

Configuration

  • Includes changes to configuration
  • Includes configuration migration instructions in documentation

Merge checklist

  • Self-review of code has been performed.
  • Feature review and validation against specification has been performed (if applicable). Apply label: QAdone
  • Need for documentation has been evaluated and, if necessary, updated. Apply label: docsdone
  • Code and implementation has been reviewed by other core developer (including any changes based on initial review). Apply label: code reviewdone

Closes #182 (closed)

Edited by Morten C. Eike

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