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Increase performance of SnapshotCreator

Øyvind Evju requested to merge 1464-snapshotcreator-scaling into dev

Description

SnapshotCreator did not scale to large analyses.

Closes issues: LA-1464 Related issues:

Create allele_id->id mappings for annotations and assessments in SnapshotCreator, for quick lookup when looping over allele_ids.

Notes to reviewer

Type of change

Application (affects UI or general functionality):

  • New feature
  • Bug fix
  • Improvement

Ops / admin / CI related only (not impacting users):

  • New feature
  • Bug fix
  • Improvement

Tests

General

  • Tests have been added that prove my fix is effective or that my feature works
  • Related tests have been modified/removed

Hypothesis testing:

  • Soak testing has been done
  • Distribution between positive / negative cases has been checked

Database

  • Includes changes to database schema
  • Includes necessary database migrations

Configuration

  • Includes changes to configuration
  • Includes configuration migration instructions in documentation

Merge checklist

  • Self-review of code performed
  • Feature review against specification (if applicable)
  • Need for documentation has been evaluated and, if necessary, updated
  • Code and implementation is reviewed by other core developer (all changes, inc. changes based on initial review)
Edited by Morten C. Eike

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