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Add inverse flag to external filter (for HGMD and ClinVar separately)

Øyvind Evju requested to merge inverse-external-filter into dev

Description

Closes issues: Related issues:

Add inverse flag for external filter (both ClinVar and HGMD). This is done in response to user request to rescue variants that are DM/DM? in HGMD and not benign with more than one star in ClinVar.

Notes to reviewer

[Are there points in the code the reviewer needs to double check or where you would like advice?]

Type of change

  • New feature
  • Breaking change
  • Bug fix
  • Improvement

General

  • Tests have been added that prove my fix is effective or that my feature works
  • Related tests have been modified/removed

Hypothesis testing:

  • Soak testing has been done
  • Distribution between positive / negative cases has been checked

Database

  • Includes changes to database schema
  • Includes necessary database migrations

Configuration

  • Includes changes to configuration
  • Includes configuration migration instructions in documentation

General

  • I have performed a self-review of my own code
  • I have commented my code, particularly in hard-to-understand areas
  • My branch has recently been updated with new changes in dev before this merge request
  • I have made corresponding changes to the documentation
Edited by Øyvind Evju

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