Worse consequence should be shown for CNV
Background
In the Prediction - Consequence card for CNVs, current pipeline, "Worse consequence" is shown for the same transcript as is shown in the top banner and carries no meaning.
Implementation
Tested in staging that the following resolves the problem:
- Resolve anno-targets#63 (closed) (annotate with all transcripts for CNVs)
- Remove line 183-184 in
/src/datalayer/alleledataloader/alleledataloader.py
to show all transcripts for CNVs in ELLA.
In addition, consider changing how CSQs are listed; would be nice to remove the unnecessary "_variant" part, as in the side bar.
NOTE: For analyses annotated with old method, this change will produce "meaningless" warnings for many CNVs. Consider re-annotating analyses that contain CNVs after this is implemented.
Edited by Morten C. Eike