Update clinvar version to 20210826 (!72) · Merge requests · ELLA / ELLA anno

Yvan requested to merge clinvar_20210701 into dev Aug 26, 2021
Description

Dataset updated/created:
Clinvar update version: 20210826
Dataset version: 20210826
Generated data has been validated (specify below)
Versioning follows previous versioning pattern
Data has been uploaded to DigitalOcean
Notes to reviewer

Validation of data

Number of entries is reasonable
File(s) is/are not truncated
File size(s) is/are reasonable
(put relevant validation data here, e.g. script output from $ANNO_DATA/SYNC_DATA_LOG here)

-- Clinvar: {('X', '601772', 'C', 'T')}
-- Calculated: {('Y', '551772', 'C', 'T'), ('X', '601772', 'C', 'T')}

-- Clinvar: {('X', '601786', 'C', 'G')}
-- Calculated: {('X', '601786', 'C', 'G'), ('Y', '551786', 'C', 'G')}

-- Clinvar: {('X', '595469', 'C', 'G')}
-- Calculated: {('Y', '545469', 'C', 'G'), ('X', '595469', 'C', 'G')}

-- Clinvar: {('X', '595533', 'G', 'T')}
-- Calculated: {('X', '595533', 'G', 'T'), ('Y', '545533', 'G', 'T')}

-- Clinvar: {('X', '601586', 'C', 'T')}
-- Calculated: {('X', '601586', 'C', 'T'), ('Y', '551586', 'C', 'T')}

-- Clinvar: {('X', '601571', 'C', 'T')}
-- Calculated: {('X', '601571', 'C', 'T'), ('Y', '551571', 'C', 'T')}

-- Clinvar: {('X', '605214', 'T', 'TC')}
-- Calculated: {('Y', '555214', 'T', 'TC'), ('X', '605214', 'T', 'TC')}

-- Clinvar: {('X', '595424', 'C', 'CAG')}
-- Calculated: {('X', '595424', 'C', 'CAG'), ('Y', '545424', 'C', 'CAG')}

-- Clinvar: {('X', '595379', 'G', 'T')}
-- Calculated: {('X', '595379', 'G', 'T'), ('Y', '545379', 'G', 'T')}

-- Clinvar: {('X', '605369', 'T', 'C')}
-- Calculated: {('Y', '555369', 'T', 'C'), ('X', '605369', 'T', 'C')}

-- Clinvar: {('X', '1409342', 'G', 'A')}
-- Calculated: {('Y', '1359342', 'G', 'A'), ('X', '1409342', 'G', 'A')}

-- Clinvar: {('4', '74270834', 'C', 'T'), ('4', '74270834', 'C', 'G'), ('4', '74270834', 'C', 'A')}
-- Calculated: {('4', '74270834', 'C', 'G'), ('4', '74270834', 'C', 'A')}

-- Clinvar: {('4', '74285979', 'A', 'T'), ('4', '74285979', 'A', 'G'), ('4', '74285979', 'A', 'C')}
-- Calculated: {('4', '74285979', 'A', 'T'), ('4', '74285979', 'A', 'C')}

-- ClinVar VCF: ('Pathogenic', 'no assertion criteria provided')
-- Fetched from XML: ('Pathogenic', 'criteria provided, single submitter')
-- Clinvar: {('11', '5247807', 'C', 'A'), ('11', '5247807', 'C', 'T'), ('11', '5247807', 'C', 'G')}
-- Calculated: {('11', '5247807', 'C', 'A'), ('11', '5247807', 'C', 'G')}

-- Clinvar: {('11', '5246921', 'A', 'T'), ('11', '5246921', 'A', 'G'), ('11', '5246921', 'A', 'C')}
-- Calculated: {('11', '5246921', 'A', 'T'), ('11', '5246921', 'A', 'C')}

-- Clinvar: {('11', '5247843', 'G', 'A'), ('11', '5247843', 'G', 'T'), ('11', '5247843', 'G', 'C')}
-- Calculated: {('11', '5247843', 'G', 'T'), ('11', '5247843', 'G', 'C')}

-- Clinvar: {('11', '5246840', 'G', 'A'), ('11', '5246840', 'G', 'T'), ('11', '5246840', 'G', 'C')}
-- Calculated: {('11', '5246840', 'G', 'T'), ('11', '5246840', 'G', 'C')}

-- Clinvar: {('11', '5247828', 'G', 'A'), ('11', '5247828', 'G', 'T'), ('11', '5247828', 'G', 'C')}
-- Calculated: {('11', '5247828', 'G', 'T'), ('11', '5247828', 'G', 'C')}

-- Clinvar: {('11', '5246945', 'G', 'A'), ('11', '5246945', 'G', 'T'), ('11', '5246945', 'G', 'C')}
-- Calculated: {('11', '5246945', 'G', 'T'), ('11', '5246945', 'G', 'C')}

-- Clinvar: {('11', '5247873', 'C', 'A'), ('11', '5247873', 'C', 'T'), ('11', '5247873', 'C', 'G')}
-- Calculated: {('11', '5247873', 'C', 'A'), ('11', '5247873', 'C', 'G')}

-- Clinvar: {('11', '5246873', 'T', 'A'), ('11', '5246873', 'T', 'C'), ('11', '5246873', 'T', 'G')}
-- Calculated: {('11', '5246873', 'T', 'A'), ('11', '5246873', 'T', 'G')}

-- Clinvar: {('11', '5247822', 'A', 'T'), ('11', '5247822', 'A', 'C'), ('11', '5247822', 'A', 'G')}
-- Calculated: {('11', '5247822', 'A', 'T'), ('11', '5247822', 'A', 'C')}

-- Clinvar: {('16', '223235', 'C', 'A'), ('16', '223235', 'C', 'T'), ('16', '223235', 'C', 'G')}
-- Calculated: {('16', '223235', 'C', 'A'), ('16', '223235', 'C', 'G')}

-- Clinvar: {('16', '223124', 'G', 'A'), ('16', '223124', 'G', 'T'), ('16', '223124', 'G', 'C')}
-- Calculated: {('16', '223124', 'G', 'T'), ('16', '223124', 'G', 'C')}

-- Clinvar: {('16', '226758', 'T', 'C'), ('16', '226758', 'T', 'A'), ('16', '226758', 'T', 'G')}
-- Calculated: {('16', '226758', 'T', 'C')}

-- Clinvar: {('X', '601577', 'G', 'C')}
-- Calculated: {('Y', '551577', 'G', 'C'), ('X', '601577', 'G', 'C')}

-- Clinvar: {('X', '601578', 'C', 'A')}
-- Calculated: {('Y', '551578', 'C', 'A'), ('X', '601578', 'C', 'A')}

-- Clinvar: {('5', '1282603', 'C', 'A'), ('5', '1282603', 'C', 'T'), ('5', '1282603', 'C', 'G')}
-- Calculated: {('5', '1282603', 'C', 'A'), ('5', '1282603', 'C', 'G')}

-- Clinvar: {('X', '595354', 'G', 'T')}
-- Calculated: {('Y', '545354', 'G', 'T'), ('X', '595354', 'G', 'T')}

-- Clinvar: {('X', '595422', 'A', 'G')}
-- Calculated: {('Y', '545422', 'A', 'G'), ('X', '595422', 'A', 'G')}

-- Clinvar: {('X', '595475', 'C', 'A')}
-- Calculated: {('X', '595475', 'C', 'A'), ('Y', '545475', 'C', 'A')}

-- Clinvar: {('X', '591695', 'C', 'T')}
-- Calculated: {('Y', '541695', 'C', 'T'), ('X', '591695', 'C', 'T')}

-- Clinvar: {('8', '97157283', 'C', 'A'), ('8', '97157283', 'C', 'T'), ('8', '97157283', 'C', 'G')}
-- Calculated: {('8', '97157283', 'C', 'A'), ('8', '97157283', 'C', 'G')}

-- Clinvar: {('14', '23883004', 'G', 'C'), ('14', '23883004', 'G', 'A'), ('14', '23883004', 'G', 'T')}
-- Calculated: {('14', '23883004', 'G', 'C'), ('14', '23883004', 'G', 'T')}

-- Clinvar: {('X', '591926', 'T', 'G')}
-- Calculated: {('X', '591926', 'T', 'G'), ('Y', '541926', 'T', 'G')}

-- Clinvar: {('X', '605321', 'G', 'A')}
-- Calculated: {('Y', '555321', 'G', 'A'), ('X', '605321', 'G', 'A')}

-- Clinvar: {('X', '591718', 'A', 'C')}
-- Calculated: {('X', '591718', 'A', 'C'), ('Y', '541718', 'A', 'C')}

-- Clinvar: {('13', '32913457', 'C', 'G'), ('13', '32913457', 'C', 'A'), ('13', '32913457', 'C', 'T')}
-- Calculated: {('13', '32913457', 'C', 'G'), ('13', '32913457', 'C', 'A')}

-- Clinvar: {('11', '2606480', 'G', 'A'), ('11', '2606480', 'G', 'T'), ('11', '2606480', 'G', 'C')}
-- Calculated: {('11', '2606480', 'G', 'T'), ('11', '2606480', 'G', 'C')}

-- Clinvar: {('X', '1325406', 'T', 'C')}
-- Calculated: {('Y', '1275406', 'T', 'C'), ('X', '1325406', 'T', 'C')}

-- Clinvar: {('X', '1325485', 'C', 'T')}
-- Calculated: {('X', '1325485', 'C', 'T'), ('Y', '1275485', 'C', 'T')}

-- Clinvar: {('X', '1321349', 'C', 'T')}
-- Calculated: {('Y', '1271349', 'C', 'T'), ('X', '1321349', 'C', 'T')}

-- Clinvar: {('X', '1317428', 'C', 'T')}
-- Calculated: {('Y', '1267428', 'C', 'T'), ('X', '1317428', 'C', 'T')}

-- Clinvar: {('X', '1314931', 'C', 'T')}
-- Calculated: {('Y', '1264931', 'C', 'T'), ('X', '1314931', 'C', 'T')}

-- Clinvar: {('X', '1409247', 'G', 'A')}
-- Calculated: {('Y', '1359247', 'G', 'A'), ('X', '1409247', 'G', 'A')}

-- Clinvar: {('X', '1401646', 'C', 'G')}
-- Calculated: {('X', '1401646', 'C', 'G'), ('Y', '1351646', 'C', 'G')}

-- Clinvar: {('X', '1407733', 'C', 'T')}
-- Calculated: {('X', '1407733', 'C', 'T'), ('Y', '1357733', 'C', 'T')}

-- Clinvar: {('X', '1409317', 'G', 'A')}
-- Calculated: {('X', '1409317', 'G', 'A'), ('Y', '1359317', 'G', 'A')}

-- Clinvar: {('X', '1422868', 'G', 'A')}
-- Calculated: {('Y', '1372868', 'G', 'A'), ('X', '1422868', 'G', 'A')}

-- Clinvar: {('X', '1424548', 'G', 'A')}
-- Calculated: {('X', '1424548', 'G', 'A'), ('Y', '1374548', 'G', 'A')}

-- Clinvar: {('X', '1428381', 'G', 'A')}
-- Calculated: {('X', '1428381', 'G', 'A'), ('Y', '1378381', 'G', 'A')}

-- Clinvar: {('X', '585263', 'G', 'C')}
-- Calculated: {('Y', '535263', 'G', 'C'), ('X', '585263', 'G', 'C')}

-- Clinvar: {('X', '585258', 'C', 'A')}
-- Calculated: {('Y', '535258', 'C', 'A'), ('X', '585258', 'C', 'A')}

-- Clinvar: {('X', '585123', 'T', 'TTTG')}
-- Calculated: {('X', '585123', 'T', 'TTTG'), ('Y', '535123', 'T', 'TTTG')}

-- Clinvar: {('X', '1419494', 'C', 'T')}
-- Calculated: {('X', '1419494', 'C', 'T'), ('Y', '1369494', 'C', 'T')}

-- Clinvar: {('X', '605362', 'G', 'A')}
-- Calculated: {('X', '605362', 'G', 'A'), ('Y', '555362', 'G', 'A')}

-- ClinVar VCF: ('Pathogenic', 'criteria provided, multiple submitters, no conflicts')
-- Fetched from XML: ('Pathogenic/Likely pathogenic', 'criteria provided, multiple submitters, no conflicts')
-- ClinVar VCF: ('Pathogenic', 'criteria provided, multiple submitters, no conflicts')
-- Fetched from XML: ('Pathogenic/Likely pathogenic', 'criteria provided, multiple submitters, no conflicts')
-- Clinvar: {('X', '1407492', 'T', 'C')}
-- Calculated: {('X', '1407492', 'T', 'C'), ('Y', '1357492', 'T', 'C')}

-- Clinvar: {('X', '1409305', 'G', 'C')}
-- Calculated: {('X', '1409305', 'G', 'C'), ('Y', '1359305', 'G', 'C')}

-- Clinvar: {('X', '1428421', 'G', 'T')}
-- Calculated: {('X', '1428421', 'G', 'T'), ('Y', '1378421', 'G', 'T')}

-- Clinvar: {('X', '1407471', 'A', 'G')}
-- Calculated: {('X', '1407471', 'A', 'G'), ('Y', '1357471', 'A', 'G')}

-- Clinvar: {('X', '1413214', 'G', 'A')}
-- Calculated: {('Y', '1363214', 'G', 'A'), ('X', '1413214', 'G', 'A')}

-- ClinVar VCF: ('Pathogenic', 'criteria provided, single submitter')
-- Fetched from XML: ('Pathogenic', 'criteria provided, multiple submitters, no conflicts')
-- Clinvar: {('X', '605382', 'A', 'AGCCCCCCGCGC')}
-- Calculated: {('X', '605382', 'A', 'AGCCCCCCGCGC'), ('Y', '555382', 'A', 'AGCCCCCCGCGC')}

-- Clinvar: {('X', '591752', 'G', 'A')}
-- Calculated: {('Y', '541752', 'G', 'A'), ('X', '591752', 'G', 'A')}

-- Clinvar: {('X', '591905', 'A', 'T')}
-- Calculated: {('X', '591905', 'A', 'T'), ('Y', '541905', 'A', 'T')}

-- Clinvar: {('X', '595338', 'C', 'A')}
-- Calculated: {('Y', '545338', 'C', 'A'), ('X', '595338', 'C', 'A')}

-- Clinvar: {('X', '591261', 'G', 'A')}
-- Calculated: {('Y', '541261', 'G', 'A'), ('X', '591261', 'G', 'A')}

-- Clinvar: {('X', '601597', 'G', 'C')}
-- Calculated: {('X', '601597', 'G', 'C'), ('Y', '551597', 'G', 'C')}

-- Clinvar: {('X', '605412', 'C', 'A')}
-- Calculated: {('Y', '555412', 'C', 'A'), ('X', '605412', 'C', 'A')}

-- Clinvar: {('X', '605654', 'A', 'AAG')}
-- Calculated: {('X', '605654', 'A', 'AAG'), ('Y', '555654', 'A', 'AAG')}

-- Clinvar: {('X', '585121', 'C', 'G')}
-- Calculated: {('X', '585121', 'C', 'G'), ('Y', '535121', 'C', 'G')}

-- Clinvar: {('X', '605356', 'G', 'A')}
-- Calculated: {('X', '605356', 'G', 'A'), ('Y', '555356', 'G', 'A')}

-- Clinvar: {('X', '605215', 'C', 'T')}
-- Calculated: {('X', '605215', 'C', 'T'), ('Y', '555215', 'C', 'T')}

-- Clinvar: {('X', '1742049', 'C', 'A')}
-- Calculated: {('Y', '1692049', 'C', 'A'), ('X', '1742049', 'C', 'A')}

-- Clinvar: {('X', '595515', 'G', 'A')}
-- Calculated: {('Y', '545515', 'G', 'A'), ('X', '595515', 'G', 'A')}

-- Clinvar: {('X', '601766', 'G', 'A')}
-- Calculated: {('X', '601766', 'G', 'A'), ('Y', '551766', 'G', 'A')}

-- Clinvar: {('X', '595512', 'T', 'C')}
-- Calculated: {('Y', '545512', 'T', 'C'), ('X', '595512', 'T', 'C')}

-- ClinVar VCF: ('Likely pathogenic', 'criteria provided, single submitter')
-- Fetched from XML: ('Pathogenic/Likely pathogenic', 'criteria provided, multiple submitters, no conflicts')
-- Clinvar: {('X', '601614', 'G', 'A')}
-- Calculated: {('Y', '551614', 'G', 'A'), ('X', '601614', 'G', 'A')}

-- Clinvar: {('X', '1314966', 'A', 'C')}
-- Calculated: {('Y', '1264966', 'A', 'C'), ('X', '1314966', 'A', 'C')}

-- Clinvar: {('X', '605295', 'A', 'G')}
-- Calculated: {('X', '605295', 'A', 'G'), ('Y', '555295', 'A', 'G')}

-- Clinvar: {('X', '591614', 'G', 'C')}
-- Calculated: {('X', '591614', 'G', 'C'), ('Y', '541614', 'G', 'C')}

-- Clinvar: {('X', '601597', 'G', 'T')}
-- Calculated: {('Y', '551597', 'G', 'T'), ('X', '601597', 'G', 'T')}

-- Clinvar: {('X', '601827', 'C', 'G')}
-- Calculated: {('X', '601827', 'C', 'G'), ('Y', '551827', 'C', 'G')}

-- Clinvar: {('X', '605112', 'G', 'T')}
-- Calculated: {('Y', '555112', 'G', 'T'), ('X', '605112', 'G', 'T')}

-- Clinvar: {('X', '619539', 'G', 'A')}
-- Calculated: {('X', '619539', 'G', 'A'), ('Y', '569539', 'G', 'A')}

-- Clinvar: {('X', '605190', 'C', 'T')}
-- Calculated: {('X', '605190', 'C', 'T'), ('Y', '555190', 'C', 'T')}

-- Clinvar: {('X', '605204', 'TAC', 'AG')}
-- Calculated: {('Y', '555204', 'TAC', 'AG'), ('X', '605204', 'TAC', 'AG')}

-- Clinvar: {('X', '1407415', 'A', 'G')}
-- Calculated: {('Y', '1357415', 'A', 'G'), ('X', '1407415', 'A', 'G')}

-- Clinvar: {('X', '1413346', 'C', 'CACAGAAAGGTCGGTGAG')}
-- Calculated: {('X', '1413346', 'C', 'CACAGAAAGGTCGGTGAG'), ('Y', '1363346', 'C', 'CACAGAAAGGTCGGTGAG')}

-- Clinvar: {('X', '1422822', 'A', 'T')}
-- Calculated: {('Y', '1372822', 'A', 'T'), ('X', '1422822', 'A', 'T')}

-- ClinVar VCF: ('Uncertain significance', 'criteria provided, single submitter')
-- Fetched from XML: ('Conflicting interpretations of pathogenicity', 'criteria provided, conflicting interpretations')
-- Clinvar: {('X', '155003588', 'C', 'T')}
-- Calculated: {('X', '155003588', 'C', 'T'), ('Y', '59106594', 'C', 'T')}

-- Clinvar: {('X', '591868', 'A', 'T')}
-- Calculated: {('Y', '541868', 'A', 'T'), ('X', '591868', 'A', 'T')}

-- ClinVar VCF: ('Likely pathogenic', 'criteria provided, single submitter')
-- Fetched from XML: ('Likely pathogenic', 'criteria provided, multiple submitters, no conflicts')
-- ClinVar VCF: ('Pathogenic', 'criteria provided, single submitter')
-- Fetched from XML: ('Pathogenic', 'criteria provided, multiple submitters, no conflicts')
-- Clinvar: {('X', '591716', 'TAAG', 'T')}
-- Calculated: {('Y', '541716', 'TAAG', 'T'), ('X', '591716', 'TAAG', 'T')}

-- Clinvar: {('X', '595437', 'G', 'C')}
-- Calculated: {('Y', '545437', 'G', 'C'), ('X', '595437', 'G', 'C')}

-- Clinvar: {('X', '601612', 'A', 'C')}
-- Calculated: {('Y', '551612', 'A', 'C'), ('X', '601612', 'A', 'C')}

-- Clinvar: {('X', '605119', 'C', 'T')}
-- Calculated: {('X', '605119', 'C', 'T'), ('Y', '555119', 'C', 'T')}

-- Clinvar: {('X', '1413242', 'A', 'G')}
-- Calculated: {('X', '1413242', 'A', 'G'), ('Y', '1363242', 'A', 'G')}

-- Clinvar: {('X', '1422866', 'G', 'A')}
-- Calculated: {('X', '1422866', 'G', 'A'), ('Y', '1372866', 'G', 'A')}

-- Clinvar: {('X', '1422841', 'T', 'G')}
-- Calculated: {('X', '1422841', 'T', 'G'), ('Y', '1372841', 'T', 'G')}

-- Clinvar: {('X', '1409296', 'G', 'A')}
-- Calculated: {('X', '1409296', 'G', 'A'), ('Y', '1359296', 'G', 'A')}

-- Clinvar: {('X', '1422865', 'C', 'T')}
-- Calculated: {('Y', '1372865', 'C', 'T'), ('X', '1422865', 'C', 'T')}

-- Clinvar: {('X', '1424366', 'G', 'A')}
-- Calculated: {('Y', '1374366', 'G', 'A'), ('X', '1424366', 'G', 'A')}

-- Clinvar: {('X', '1424428', 'G', 'A')}
-- Calculated: {('Y', '1374428', 'G', 'A'), ('X', '1424428', 'G', 'A')}

-- ClinVar VCF: ('Pathogenic', 'criteria provided, single submitter')
-- Fetched from XML: ('Pathogenic', 'criteria provided, multiple submitters, no conflicts')
-- ClinVar VCF: ('Pathogenic', 'criteria provided, single submitter')
-- Fetched from XML: ('Pathogenic', 'criteria provided, multiple submitters, no conflicts')
-- Clinvar: {('X', '1413280', 'C', 'T')}
-- Calculated: {('Y', '1363280', 'C', 'T'), ('X', '1413280', 'C', 'T')}

-- Clinvar: {('X', '1413250', 'G', 'A')}
-- Calculated: {('X', '1413250', 'G', 'A'), ('Y', '1363250', 'G', 'A')}

-- Clinvar: {('X', '1404785', 'A', 'G')}
-- Calculated: {('Y', '1354785', 'A', 'G'), ('X', '1404785', 'A', 'G')}

-- Clinvar: {('X', '1422875', 'C', 'G')}
-- Calculated: {('Y', '1372875', 'C', 'G'), ('X', '1422875', 'C', 'G')}

-- Clinvar: {('X', '1409286', 'G', 'A')}
-- Calculated: {('Y', '1359286', 'G', 'A'), ('X', '1409286', 'G', 'A')}

-- Clinvar: {('X', '1413266', 'C', 'T')}
-- Calculated: {('X', '1413266', 'C', 'T'), ('Y', '1363266', 'C', 'T')}

-- Clinvar: {('X', '1422885', 'G', 'T')}
-- Calculated: {('X', '1422885', 'G', 'T'), ('Y', '1372885', 'G', 'T')}

-- Clinvar: {('X', '619576', 'T', 'C')}
-- Calculated: {('X', '619576', 'T', 'C'), ('Y', '569576', 'T', 'C')}

-- Clinvar: {('X', '619580', 'A', 'G')}
-- Calculated: {('X', '619580', 'A', 'G'), ('Y', '569580', 'A', 'G')}

-- Clinvar: {('X', '591776', 'G', 'A')}
-- Calculated: {('X', '591776', 'G', 'A'), ('Y', '541776', 'G', 'A')}

-- Clinvar: {('X', '595424', 'CAG', 'C')}
-- Calculated: {('X', '595424', 'CAG', 'C'), ('Y', '545424', 'CAG', 'C')}

-- Clinvar: {('X', '595454', 'G', 'C')}
-- Calculated: {('Y', '545454', 'G', 'C'), ('X', '595454', 'G', 'C')}

-- Clinvar: {('X', '595569', 'C', 'G')}
-- Calculated: {('X', '595569', 'C', 'G'), ('Y', '545569', 'C', 'G')}

-- Clinvar: {('X', '601736', 'G', 'A')}
-- Calculated: {('X', '601736', 'G', 'A'), ('Y', '551736', 'G', 'A')}

-- Clinvar: {('X', '605132', 'G', 'A')}
-- Calculated: {('X', '605132', 'G', 'A'), ('Y', '555132', 'G', 'A')}

-- Clinvar: {('X', '619543', 'G', 'A')}
-- Calculated: {('X', '619543', 'G', 'A'), ('Y', '569543', 'G', 'A')}

-- Clinvar: {('X', '591692', 'CGGCGGA', 'C')}
-- Calculated: {('Y', '541692', 'CGGCGGA', 'C'), ('X', '591692', 'CGGCGGA', 'C')}

-- Clinvar: {('X', '605213', 'T', 'C')}
-- Calculated: {('X', '605213', 'T', 'C'), ('Y', '555213', 'T', 'C')}

-- Clinvar: {('X', '591622', 'CG', 'C')}
-- Calculated: {('X', '591622', 'CG', 'C'), ('Y', '541622', 'CG', 'C')}

-- Clinvar: {('X', '605194', 'G', 'A')}
-- Calculated: {('Y', '555194', 'G', 'A'), ('X', '605194', 'G', 'A')}

-- Clinvar: {('X', '591117', 'C', 'G')}
-- Calculated: {('X', '591117', 'C', 'G'), ('Y', '541117', 'C', 'G')}

-- Clinvar: {('X', '591156', 'C', 'T')}
-- Calculated: {('X', '591156', 'C', 'T'), ('Y', '541156', 'C', 'T')}

-- Clinvar: {('X', '591578', 'C', 'T')}
-- Calculated: {('Y', '541578', 'C', 'T'), ('X', '591578', 'C', 'T')}

-- Clinvar: {('X', '1428379', 'G', 'A')}
-- Calculated: {('X', '1428379', 'G', 'A'), ('Y', '1378379', 'G', 'A')}

-- Clinvar: {('X', '591105', 'G', 'A')}
-- Calculated: {('X', '591105', 'G', 'A'), ('Y', '541105', 'G', 'A')}

-- Clinvar: {('X', '1742203', 'A', 'G')}
-- Calculated: {('X', '1742203', 'A', 'G'), ('Y', '1692203', 'A', 'G')}

-- Clinvar: {('X', '595554', 'G', 'A')}
-- Calculated: {('X', '595554', 'G', 'A'), ('Y', '545554', 'G', 'A')}

-- Clinvar: {('X', '1407473', 'T', 'C')}
-- Calculated: {('X', '1407473', 'T', 'C'), ('Y', '1357473', 'T', 'C')}

-- Clinvar: {('X', '2658826', 'G', 'C')}
-- Calculated: {('Y', '2608826', 'G', 'C'), ('X', '2658826', 'G', 'C')}

-- ClinVar VCF: ('Uncertain significance', 'criteria provided, single submitter')
-- Fetched from XML: ('Uncertain significance', 'criteria provided, multiple submitters, no conflicts')
-- Clinvar: {('X', '1404761', 'C', 'A')}
-- Calculated: {('X', '1404761', 'C', 'A'), ('Y', '1354761', 'C', 'A')}

-- ClinVar VCF: ('Uncertain significance', 'no assertion criteria provided')
-- Fetched from XML: ('Pathogenic', 'criteria provided, single submitter')
-- Clinvar: {('X', '1419485', 'G', 'C')}
-- Calculated: {('Y', '1369485', 'G', 'C'), ('X', '1419485', 'G', 'C')}

-- Clinvar: {('X', '1407424', 'G', 'A')}
-- Calculated: {('X', '1407424', 'G', 'A'), ('Y', '1357424', 'G', 'A')}

-- Clinvar: {('X', '1407443', 'G', 'A')}
-- Calculated: {('X', '1407443', 'G', 'A'), ('Y', '1357443', 'G', 'A')}

-- Clinvar: {('X', '1409286', 'G', 'C')}
-- Calculated: {('Y', '1359286', 'G', 'C'), ('X', '1409286', 'G', 'C')}

-- Clinvar: {('X', '1409352', 'G', 'A')}
-- Calculated: {('X', '1409352', 'G', 'A'), ('Y', '1359352', 'G', 'A')}

-- Clinvar: {('X', '1404757', 'A', 'G')}
-- Calculated: {('Y', '1354757', 'A', 'G'), ('X', '1404757', 'A', 'G')}

-- Clinvar: {('X', '1424350', 'T', 'G')}
-- Calculated: {('Y', '1374350', 'T', 'G'), ('X', '1424350', 'T', 'G')}

-- Clinvar: {('X', '1424356', 'G', 'A')}
-- Calculated: {('Y', '1374356', 'G', 'A'), ('X', '1424356', 'G', 'A')}

-- Clinvar: {('X', '1428325', 'G', 'A')}
-- Calculated: {('Y', '1378325', 'G', 'A'), ('X', '1428325', 'G', 'A')}

-- Clinvar: {('X', '1407529', 'A', 'T')}
-- Calculated: {('X', '1407529', 'A', 'T'), ('Y', '1357529', 'A', 'T')}

-- Clinvar: {('X', '1401665', 'G', 'T')}
-- Calculated: {('Y', '1351665', 'G', 'T'), ('X', '1401665', 'G', 'T')}

-- Clinvar: {('X', '1407660', 'G', 'T')}
-- Calculated: {('X', '1407660', 'G', 'T'), ('Y', '1357660', 'G', 'T')}

-- Clinvar: {('X', '1409321', 'C', 'T')}
-- Calculated: {('X', '1409321', 'C', 'T'), ('Y', '1359321', 'C', 'T')}

-- Clinvar: {('X', '1409252', 'C', 'T')}
-- Calculated: {('X', '1409252', 'C', 'T'), ('Y', '1359252', 'C', 'T')}

-- Clinvar: {('X', '1409246', 'C', 'T')}
-- Calculated: {('X', '1409246', 'C', 'T'), ('Y', '1359246', 'C', 'T')}

-- Clinvar: {('X', '1428337', 'C', 'G')}
-- Calculated: {('Y', '1378337', 'C', 'G'), ('X', '1428337', 'C', 'G')}

-- Clinvar: {('X', '1422903', 'T', 'C')}
-- Calculated: {('X', '1422903', 'T', 'C'), ('Y', '1372903', 'T', 'C')}

-- ClinVar VCF: ('Pathogenic', 'no assertion criteria provided')
-- Fetched from XML: ('Likely pathogenic', 'criteria provided, single submitter')
-- ClinVar VCF: ('Likely pathogenic', 'criteria provided, single submitter')
-- Fetched from XML: ('Pathogenic/Likely pathogenic', 'criteria provided, multiple submitters, no conflicts')
-- Clinvar: {('X', '155169436', 'T', 'C')}
-- Calculated: {('Y', '59272442', 'T', 'C'), ('X', '155169436', 'T', 'C')}

-- Clinvar: {('X', '1508507', 'A', 'C')}
-- Calculated: {('Y', '1458507', 'A', 'C'), ('X', '1508507', 'A', 'C')}

-- Clinvar: {('X', '1422856', 'G', 'C')}
-- Calculated: {('X', '1422856', 'G', 'C'), ('Y', '1372856', 'G', 'C')}

-- Clinvar: {('X', '1422836', 'G', 'A')}
-- Calculated: {('Y', '1372836', 'G', 'A'), ('X', '1422836', 'G', 'A')}

-- Clinvar: {('X', '1505633', 'G', 'A')}
-- Calculated: {('Y', '1455633', 'G', 'A'), ('X', '1505633', 'G', 'A')}

-- Clinvar: {('X', '1424417', 'C', 'T')}
-- Calculated: {('X', '1424417', 'C', 'T'), ('Y', '1374417', 'C', 'T')}

-- Clinvar: {('X', '155130198', 'T', 'C')}
-- Calculated: {('Y', '59233204', 'T', 'C'), ('X', '155130198', 'T', 'C')}

-- Clinvar: {('X', '155003641', 'A', 'G')}
-- Calculated: {('Y', '59106647', 'A', 'G'), ('X', '155003641', 'A', 'G')}

-- Clinvar: {('X', '1409410', 'T', 'C')}
-- Calculated: {('X', '1409410', 'T', 'C'), ('Y', '1359410', 'T', 'C')}

-- Clinvar: {('X', '2406779', 'T', 'G')}
-- Calculated: {('Y', '2356779', 'T', 'G'), ('X', '2406779', 'T', 'G')}

-- Clinvar: {('X', '1501319', 'G', 'A')}
-- Calculated: {('X', '1501319', 'G', 'A'), ('Y', '1451319', 'G', 'A')}

-- Clinvar: {('X', '1471102', 'C', 'T')}
-- Calculated: {('Y', '1421102', 'C', 'T'), ('X', '1471102', 'C', 'T')}

-- Clinvar: {('X', '1508147', 'G', 'A')}
-- Calculated: {('X', '1508147', 'G', 'A'), ('Y', '1458147', 'G', 'A')}

-- Clinvar: {('X', '1422835', 'C', 'T')}
-- Calculated: {('X', '1422835', 'C', 'T'), ('Y', '1372835', 'C', 'T')}

-- Clinvar: {('X', '1508279', 'C', 'T')}
-- Calculated: {('Y', '1458279', 'C', 'T'), ('X', '1508279', 'C', 'T')}

-- Clinvar: {('X', '1407772', 'G', 'A')}
-- Calculated: {('X', '1407772', 'G', 'A'), ('Y', '1357772', 'G', 'A')}

-- Clinvar: {('X', '1467397', 'C', 'T')}
-- Calculated: {('X', '1467397', 'C', 'T'), ('Y', '1417397', 'C', 'T')}

-- Clinvar: {('X', '1409411', 'A', 'G')}
-- Calculated: {('X', '1409411', 'A', 'G'), ('Y', '1359411', 'A', 'G')}

-- Clinvar: {('X', '1407486', 'G', 'A')}
-- Calculated: {('Y', '1357486', 'G', 'A'), ('X', '1407486', 'G', 'A')}

-- Clinvar: {('X', '1413255', 'T', 'C')}
-- Calculated: {('Y', '1363255', 'T', 'C'), ('X', '1413255', 'T', 'C')}

-- Clinvar: {('X', '1413213', 'C', 'T')}
-- Calculated: {('Y', '1363213', 'C', 'T'), ('X', '1413213', 'C', 'T')}

-- Clinvar: {('X', '1413249', 'C', 'T')}
-- Calculated: {('X', '1413249', 'C', 'T'), ('Y', '1363249', 'C', 'T')}

-- Clinvar: {('X', '1407737', 'G', 'A')}
-- Calculated: {('X', '1407737', 'G', 'A'), ('Y', '1357737', 'G', 'A')}

-- Clinvar: {('X', '1407665', 'C', 'T')}
-- Calculated: {('X', '1407665', 'C', 'T'), ('Y', '1357665', 'C', 'T')}

-- Clinvar: {('X', '155239499', 'G', 'A')}
-- Calculated: {('Y', '59342505', 'G', 'A'), ('X', '155239499', 'G', 'A')}

-- Clinvar: {('X', '155239602', 'G', 'A')}
-- Calculated: {('X', '155239602', 'G', 'A'), ('Y', '59342608', 'G', 'A')}

-- Clinvar: {('X', '1471062', 'G', 'C')}
-- Calculated: {('X', '1471062', 'G', 'C'), ('Y', '1421062', 'G', 'C')}

-- Clinvar: {('X', '1505630', 'G', 'A')}
-- Calculated: {('X', '1505630', 'G', 'A'), ('Y', '1455630', 'G', 'A')}

-- Clinvar: {('X', '2407927', 'C', 'T')}
-- Calculated: {('X', '2407927', 'C', 'T'), ('Y', '2357927', 'C', 'T')}

-- Clinvar: {('X', '2408545', 'G', 'A')}
-- Calculated: {('X', '2408545', 'G', 'A'), ('Y', '2358545', 'G', 'A')}

-- Clinvar: {('X', '155127898', 'C', 'G')}
-- Calculated: {('X', '155127898', 'C', 'G'), ('Y', '59230904', 'C', 'G')}

-- Clinvar: {('X', '2407846', 'G', 'T')}
-- Calculated: {('Y', '2357846', 'G', 'T'), ('X', '2407846', 'G', 'T')}

-- Clinvar: {('X', '1508426', 'G', 'A')}
-- Calculated: {('Y', '1458426', 'G', 'A'), ('X', '1508426', 'G', 'A')}

-- Clinvar: {('X', '155234224', 'C', 'T')}
-- Calculated: {('Y', '59337230', 'C', 'T'), ('X', '155234224', 'C', 'T')}

-- Clinvar: {('X', '2406995', 'T', 'C')}
-- Calculated: {('X', '2406995', 'T', 'C'), ('Y', '2356995', 'T', 'C')}

-- Clinvar: {('X', '1407749', 'C', 'T')}
-- Calculated: {('X', '1407749', 'C', 'T'), ('Y', '1357749', 'C', 'T')}

-- Clinvar: {('X', '2408593', 'G', 'A')}
-- Calculated: {('X', '2408593', 'G', 'A'), ('Y', '2358593', 'G', 'A')}

-- Clinvar: {('X', '1508465', 'G', 'A')}
-- Calculated: {('X', '1508465', 'G', 'A'), ('Y', '1458465', 'G', 'A')}

-- Clinvar: {('X', '2407189', 'G', 'A')}
-- Calculated: {('X', '2407189', 'G', 'A'), ('Y', '2357189', 'G', 'A')}

-- Clinvar: {('X', '155233235', 'G', 'A')}
-- Calculated: {('X', '155233235', 'G', 'A'), ('Y', '59336241', 'G', 'A')}

-- Clinvar: {('X', '2408659', 'G', 'A')}
-- Calculated: {('Y', '2358659', 'G', 'A'), ('X', '2408659', 'G', 'A')}

-- Clinvar: {('X', '1508303', 'C', 'T')}
-- Calculated: {('Y', '1458303', 'C', 'T'), ('X', '1508303', 'C', 'T')}

-- Clinvar: {('X', '1424333', 'T', 'C')}
-- Calculated: {('X', '1424333', 'T', 'C'), ('Y', '1374333', 'T', 'C')}

-- Clinvar: {('X', '155130182', 'G', 'A')}
-- Calculated: {('X', '155130182', 'G', 'A'), ('Y', '59233188', 'G', 'A')}

-- Clinvar: {('X', '1584583', 'G', 'C')}
-- Calculated: {('X', '1584583', 'G', 'C'), ('Y', '1534583', 'G', 'C')}

-- Clinvar: {('X', '619562', 'T', 'C')}
-- Calculated: {('X', '619562', 'T', 'C'), ('Y', '569562', 'T', 'C')}

-- Clinvar: {('X', '605383', 'GC', 'G')}
-- Calculated: {('Y', '555383', 'GC', 'G'), ('X', '605383', 'GC', 'G')}

-- Clinvar: {('X', '595474', 'G', 'C')}
-- Calculated: {('X', '595474', 'G', 'C'), ('Y', '545474', 'G', 'C')}

-- Clinvar: {('X', '595478', 'C', 'G')}
-- Calculated: {('Y', '545478', 'C', 'G'), ('X', '595478', 'C', 'G')}

-- Clinvar: {('X', '601724', 'T', 'C')}
-- Calculated: {('Y', '551724', 'T', 'C'), ('X', '601724', 'T', 'C')}

-- Clinvar: {('X', '605214', 'TC', 'T')}
-- Calculated: {('Y', '555214', 'TC', 'T'), ('X', '605214', 'TC', 'T')}

-- Clinvar: {('19', '42482308', 'T', 'G'), ('19', '42482308', 'T', 'C'), ('19', '42482308', 'T', 'A')}
-- Calculated: {('19', '42482308', 'T', 'C')}

-- Clinvar: {('X', '1407434', 'G', 'A')}
-- Calculated: {('Y', '1357434', 'G', 'A'), ('X', '1407434', 'G', 'A')}

-- Clinvar: {('X', '1404731', 'A', 'G')}
-- Calculated: {('Y', '1354731', 'A', 'G'), ('X', '1404731', 'A', 'G')}

-- Clinvar: {('X', '1407675', 'AATTTCTCCTG', 'A')}
-- Calculated: {('Y', '1357675', 'AATTTCTCCTG', 'A'), ('X', '1407675', 'AATTTCTCCTG', 'A')}

-- Clinvar: {('X', '1413358', 'G', 'A')}
-- Calculated: {('X', '1413358', 'G', 'A'), ('Y', '1363358', 'G', 'A')}

-- Clinvar: {('X', '1414328', 'G', 'C')}
-- Calculated: {('Y', '1364328', 'G', 'C'), ('X', '1414328', 'G', 'C')}

-- Clinvar: {('X', '1424359', 'T', 'C')}
-- Calculated: {('Y', '1374359', 'T', 'C'), ('X', '1424359', 'T', 'C')}

-- Clinvar: {('X', '1407540', 'G', 'A')}
-- Calculated: {('X', '1407540', 'G', 'A'), ('Y', '1357540', 'G', 'A')}

-- Clinvar: {('X', '1409366', 'C', 'T')}
-- Calculated: {('Y', '1359366', 'C', 'T'), ('X', '1409366', 'C', 'T')}

-- Clinvar: {('X', '1409357', 'A', 'C')}
-- Calculated: {('X', '1409357', 'A', 'C'), ('Y', '1359357', 'A', 'C')}

-- Clinvar: {('X', '1409351', 'C', 'T')}
-- Calculated: {('Y', '1359351', 'C', 'T'), ('X', '1409351', 'C', 'T')}

-- Clinvar: {('X', '1404677', 'G', 'A')}
-- Calculated: {('Y', '1354677', 'G', 'A'), ('X', '1404677', 'G', 'A')}

-- Clinvar: {('X', '1407655', 'G', 'A')}
-- Calculated: {('Y', '1357655', 'G', 'A'), ('X', '1407655', 'G', 'A')}

ERROR:root:No vcf lines produced for variant 870641, even though variant is in clinvar vcf
-- Clinvar: {('X', '1424413', 'A', 'T')}
-- Calculated: {('Y', '1374413', 'A', 'T'), ('X', '1424413', 'A', 'T')}

-- Clinvar: {('X', '601575', 'G', 'A')}
-- Calculated: {('Y', '551575', 'G', 'A'), ('X', '601575', 'G', 'A')}

-- Clinvar: {('X', '591614', 'G', 'A')}
-- Calculated: {('X', '591614', 'G', 'A'), ('Y', '541614', 'G', 'A')}

-- Clinvar: {('X', '1409336', 'G', 'A')}
-- Calculated: {('Y', '1359336', 'G', 'A'), ('X', '1409336', 'G', 'A')}

-- Clinvar: {('X', '1422857', 'C', 'T')}
-- Calculated: {('Y', '1372857', 'C', 'T'), ('X', '1422857', 'C', 'T')}

-- Clinvar: {('X', '1419477', 'C', 'T')}
-- Calculated: {('Y', '1369477', 'C', 'T'), ('X', '1419477', 'C', 'T')}

-- Clinvar: {('X', '1419409', 'A', 'C')}
-- Calculated: {('X', '1419409', 'A', 'C'), ('Y', '1369409', 'A', 'C')}

-- Clinvar: {('X', '1401671', 'G', 'A')}
-- Calculated: {('Y', '1351671', 'G', 'A'), ('X', '1401671', 'G', 'A')}

-- Clinvar: {('X', '1409381', 'C', 'G')}
-- Calculated: {('Y', '1359381', 'C', 'G'), ('X', '1409381', 'C', 'G')}

-- Clinvar: {('X', '1424365', 'C', 'T')}
-- Calculated: {('Y', '1374365', 'C', 'T'), ('X', '1424365', 'C', 'T')}

-- Clinvar: {('X', '1407666', 'G', 'A')}
-- Calculated: {('Y', '1357666', 'G', 'A'), ('X', '1407666', 'G', 'A')}

-- Clinvar: {('X', '1401617', 'C', 'A')}
-- Calculated: {('X', '1401617', 'C', 'A'), ('Y', '1351617', 'C', 'A')}

-- Clinvar: {('X', '1407526', 'C', 'T')}
-- Calculated: {('Y', '1357526', 'C', 'T'), ('X', '1407526', 'C', 'T')}

-- Clinvar: {('X', '1407736', 'C', 'T')}
-- Calculated: {('X', '1407736', 'C', 'T'), ('Y', '1357736', 'C', 'T')}

-- Clinvar: {('X', '1404738', 'C', 'G')}
-- Calculated: {('X', '1404738', 'C', 'G'), ('Y', '1354738', 'C', 'G')}

-- Clinvar: {('X', '1407744', 'C', 'T')}
-- Calculated: {('Y', '1357744', 'C', 'T'), ('X', '1407744', 'C', 'T')}

-- Clinvar: {('X', '1404802', 'G', 'A')}
-- Calculated: {('Y', '1354802', 'G', 'A'), ('X', '1404802', 'G', 'A')}

-- Clinvar: {('X', '1413256', 'T', 'C')}
-- Calculated: {('X', '1413256', 'T', 'C'), ('Y', '1363256', 'T', 'C')}

-- Clinvar: {('X', '1422896', 'G', 'A')}
-- Calculated: {('Y', '1372896', 'G', 'A'), ('X', '1422896', 'G', 'A')}

-- Clinvar: {('X', '1419399', 'G', 'A')}
-- Calculated: {('Y', '1369399', 'G', 'A'), ('X', '1419399', 'G', 'A')}

-- Clinvar: {('X', '1424336', 'C', 'G')}
-- Calculated: {('Y', '1374336', 'C', 'G'), ('X', '1424336', 'C', 'G')}

-- Clinvar: {('X', '1422821', 'G', 'A')}
-- Calculated: {('X', '1422821', 'G', 'A'), ('Y', '1372821', 'G', 'A')}

-- Clinvar: {('X', '1404677', 'G', 'C')}
-- Calculated: {('X', '1404677', 'G', 'C'), ('Y', '1354677', 'G', 'C')}

-- Clinvar: {('X', '1404725', 'C', 'T')}
-- Calculated: {('X', '1404725', 'C', 'T'), ('Y', '1354725', 'C', 'T')}

-- Clinvar: {('X', '155214885', 'GACCTTATATTGCTAGCCTTCATCTATCTCTATCTGTCCCTGTCTGTCCCTATGGTACCTGTTAGTTCCTGCAAGTTCCTGTCTTTCCCTACTTAGCTGTACTTACTTAGCTCTACTTACTTAGCTCTACTTACTTAGCTCTATCTCTTCCTGGAAACCTTTTTTATGACCCTGGATAGAGCTCAGAAATCCACCCTTTAAGCTTCAGCAAGAGATAAAACAGGGACTCTGGACCCGGCACCAGATTGAAAGGAACAGGAAGTGCTCTCCCCCTCCCCAAAGCAGGAAAACCAGAGTTTGGCCCTTGCAAATTTCCACTCCACATCAGCGTCATCCTCAATTTCCTGGAGTGAACTGTTGATCATTGCAATTAACATATTTAGCAAAACAATGACCATTGTAACATCATAGACTCCATAAAGAACATAACCAATGTTTTCAATGAATTTGTGGCTATAGTTGATGACCACTGATTTCACTGCAGAAAGCACAAATGTAGCCCAGAACAGTGTCTTAAAACTCTCTTCAACTGTTGTGAAGGCTTCATTTTGTTTTACATCAATGTAGTAGGAGTAGAGGTTGAACATTCCAATCATAAAGGCCACAAACACCATAATGAATATGAGCATGAACCTGAAGATGTCTTTGACTGCTCCTCCAAGCGACGTCTGCAGAGGTCCAAAGCTTTCATTTGCTGGCAAAATACAAGCTATCCCAGAGAAACTCAAAACCACAGCAACTGCACAAAGACCTTCAGACACCATACGAGGATCCGAGGGGTCCCACTCCCTCCTGGCCAAACTGTAGTATTTCACATTATCTCCCAATGTTACTTTTGTCAAGTCCTTCAAAGTATCACTTGCATCAGTGATGCTCTGGGCTTTGGAAGCATGCCAGAATGCCCTGAATCTTGCAATGAATGATGCTGATAAAATTGCTAACATACCAAAATCAAGCATGTTCCACAACTCAAACAAATATTCCTTGGGGCCTTGAGTCCAAATTTCTTTACATTCAGCCCATATCATGCCTCTGCGCTCATTAAATCTGTTTTTCTCTAGCAGAGGAAGGTTAACCATGAAACTGAAGCTTCAAGATGACTTTACTTGCCCAGGCTCCTTCTAAGTCCTCA', 'T')}
-- Calculated: {('X', '155214885', 'GACCTTATATTGCTAGCCTTCATCTATCTCTATCTGTCCCTGTCTGTCCCTATGGTACCTGTTAGTTCCTGCAAGTTCCTGTCTTTCCCTACTTAGCTGTACTTACTTAGCTCTACTTACTTAGCTCTACTTACTTAGCTCTATCTCTTCCTGGAAACCTTTTTTATGACCCTGGATAGAGCTCAGAAATCCACCCTTTAAGCTTCAGCAAGAGATAAAACAGGGACTCTGGACCCGGCACCAGATTGAAAGGAACAGGAAGTGCTCTCCCCCTCCCCAAAGCAGGAAAACCAGAGTTTGGCCCTTGCAAATTTCCACTCCACATCAGCGTCATCCTCAATTTCCTGGAGTGAACTGTTGATCATTGCAATTAACATATTTAGCAAAACAATGACCATTGTAACATCATAGACTCCATAAAGAACATAACCAATGTTTTCAATGAATTTGTGGCTATAGTTGATGACCACTGATTTCACTGCAGAAAGCACAAATGTAGCCCAGAACAGTGTCTTAAAACTCTCTTCAACTGTTGTGAAGGCTTCATTTTGTTTTACATCAATGTAGTAGGAGTAGAGGTTGAACATTCCAATCATAAAGGCCACAAACACCATAATGAATATGAGCATGAACCTGAAGATGTCTTTGACTGCTCCTCCAAGCGACGTCTGCAGAGGTCCAAAGCTTTCATTTGCTGGCAAAATACAAGCTATCCCAGAGAAACTCAAAACCACAGCAACTGCACAAAGACCTTCAGACACCATACGAGGATCCGAGGGGTCCCACTCCCTCCTGGCCAAACTGTAGTATTTCACATTATCTCCCAATGTTACTTTTGTCAAGTCCTTCAAAGTATCACTTGCATCAGTGATGCTCTGGGCTTTGGAAGCATGCCAGAATGCCCTGAATCTTGCAATGAATGATGCTGATAAAATTGCTAACATACCAAAATCAAGCATGTTCCACAACTCAAACAAATATTCCTTGGGGCCTTGAGTCCAAATTTCTTTACATTCAGCCCATATCATGCCTCTGCGCTCATTAAATCTGTTTTTCTCTAGCAGAGGAAGGTTAACCATGAAACTGAAGCTTCAAGATGACTTTACTTGCCCAGGCTCCTTCTAAGTCCTCA', 'T'), ('Y', '59317891', 'GACCTTATATTGCTAGCCTTCATCTATCTCTATCTGTCCCTGTCTGTCCCTATGGTACCTGTTAGTTCCTGCAAGTTCCTGTCTTTCCCTACTTAGCTGTACTTACTTAGCTCTACTTACTTAGCTCTACTTACTTAGCTCTATCTCTTCCTGGAAACCTTTTTTATGACCCTGGATAGAGCTCAGAAATCCACCCTTTAAGCTTCAGCAAGAGATAAAACAGGGACTCTGGACCCGGCACCAGATTGAAAGGAACAGGAAGTGCTCTCCCCCTCCCCAAAGCAGGAAAACCAGAGTTTGGCCCTTGCAAATTTCCACTCCACATCAGCGTCATCCTCAATTTCCTGGAGTGAACTGTTGATCATTGCAATTAACATATTTAGCAAAACAATGACCATTGTAACATCATAGACTCCATAAAGAACATAACCAATGTTTTCAATGAATTTGTGGCTATAGTTGATGACCACTGATTTCACTGCAGAAAGCACAAATGTAGCCCAGAACAGTGTCTTAAAACTCTCTTCAACTGTTGTGAAGGCTTCATTTTGTTTTACATCAATGTAGTAGGAGTAGAGGTTGAACATTCCAATCATAAAGGCCACAAACACCATAATGAATATGAGCATGAACCTGAAGATGTCTTTGACTGCTCCTCCAAGCGACGTCTGCAGAGGTCCAAAGCTTTCATTTGCTGGCAAAATACAAGCTATCCCAGAGAAACTCAAAACCACAGCAACTGCACAAAGACCTTCAGACACCATACGAGGATCCGAGGGGTCCCACTCCCTCCTGGCCAAACTGTAGTATTTCACATTATCTCCCAATGTTACTTTTGTCAAGTCCTTCAAAGTATCACTTGCATCAGTGATGCTCTGGGCTTTGGAAGCATGCCAGAATGCCCTGAATCTTGCAATGAATGATGCTGATAAAATTGCTAACATACCAAAATCAAGCATGTTCCACAACTCAAACAAATATTCCTTGGGGCCTTGAGTCCAAATTTCTTTACATTCAGCCCATATCATGCCTCTGCGCTCATTAAATCTGTTTTTCTCTAGCAGAGGAAGGTTAACCATGAAACTGAAGCTTCAAGATGACTTTACTTGCCCAGGCTCCTTCTAAGTCCTCA', 'T')}

-- Clinvar: {('X', '591681', 'A', 'T')}
-- Calculated: {('X', '591681', 'A', 'T'), ('Y', '541681', 'A', 'T')}

-- Clinvar: {('X', '907453', 'C', 'G')}
-- Calculated: {('Y', '857453', 'C', 'G'), ('X', '907453', 'C', 'G')}

-- Clinvar: {('X', '595424', 'C', 'T')}
-- Calculated: {('X', '595424', 'C', 'T'), ('Y', '545424', 'C', 'T')}

-- Clinvar: {('X', '601793', 'AT', 'A')}
-- Calculated: {('X', '601793', 'AT', 'A'), ('Y', '551793', 'AT', 'A')}

-- Clinvar: {('X', '601564', 'C', 'A')}
-- Calculated: {('X', '601564', 'C', 'A'), ('Y', '551564', 'C', 'A')}

-- Clinvar: {('X', '591568', 'C', 'A')}
-- Calculated: {('X', '591568', 'C', 'A'), ('Y', '541568', 'C', 'A')}

-- Clinvar: {('X', '601623', 'G', 'A')}
-- Calculated: {('X', '601623', 'G', 'A'), ('Y', '551623', 'G', 'A')}

-- Clinvar: {('X', '619561', 'A', 'G')}
-- Calculated: {('X', '619561', 'A', 'G'), ('Y', '569561', 'A', 'G')}

-- Clinvar: {('X', '591714', 'G', 'C')}
-- Calculated: {('Y', '541714', 'G', 'C'), ('X', '591714', 'G', 'C')}

-- Clinvar: {('X', '605332', 'G', 'C')}
-- Calculated: {('X', '605332', 'G', 'C'), ('Y', '555332', 'G', 'C')}

-- Clinvar: {('X', '605374', 'C', 'T')}
-- Calculated: {('Y', '555374', 'C', 'T'), ('X', '605374', 'C', 'T')}

-- Clinvar: {('X', '605376', 'C', 'T')}
-- Calculated: {('X', '605376', 'C', 'T'), ('Y', '555376', 'C', 'T')}

-- Clinvar: {('X', '595436', 'C', 'G')}
-- Calculated: {('X', '595436', 'C', 'G'), ('Y', '545436', 'C', 'G')}

-- Clinvar: {('X', '591669', 'G', 'A')}
-- Calculated: {('X', '591669', 'G', 'A'), ('Y', '541669', 'G', 'A')}

-- Clinvar: {('X', '595477', 'A', 'G')}
-- Calculated: {('Y', '545477', 'A', 'G'), ('X', '595477', 'A', 'G')}

-- Clinvar: {('X', '595495', 'T', 'C')}
-- Calculated: {('X', '595495', 'T', 'C'), ('Y', '545495', 'T', 'C')}

ERROR:root:No vcf lines produced for variant 999567, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1002444, even though variant is in clinvar vcf
-- Clinvar: {('X', '1407750', 'G', 'A')}
-- Calculated: {('X', '1407750', 'G', 'A'), ('Y', '1357750', 'G', 'A')}

-- Clinvar: {('X', '1413263', 'C', 'T')}
-- Calculated: {('X', '1413263', 'C', 'T'), ('Y', '1363263', 'C', 'T')}

ERROR:root:No vcf lines produced for variant 1014000, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1016714, even though variant is in clinvar vcf
-- Clinvar: {('X', '1428340', 'G', 'A')}
-- Calculated: {('X', '1428340', 'G', 'A'), ('Y', '1378340', 'G', 'A')}

-- Clinvar: {('X', '1409322', 'G', 'A')}
-- Calculated: {('X', '1409322', 'G', 'A'), ('Y', '1359322', 'G', 'A')}

ERROR:root:No vcf lines produced for variant 1023355, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1025614, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1025617, even though variant is in clinvar vcf
-- Clinvar: {('X', '595464', 'A', 'C')}
-- Calculated: {('Y', '545464', 'A', 'C'), ('X', '595464', 'A', 'C')}

-- Clinvar: {('X', '591670', 'A', 'G')}
-- Calculated: {('X', '591670', 'A', 'G'), ('Y', '541670', 'A', 'G')}

ERROR:root:No vcf lines produced for variant 1037083, even though variant is in clinvar vcf
-- Clinvar: {('X', '1413357', 'C', 'T')}
-- Calculated: {('X', '1413357', 'C', 'T'), ('Y', '1363357', 'C', 'T')}

-- Clinvar: {('X', '1428298', 'A', 'C')}
-- Calculated: {('X', '1428298', 'A', 'C'), ('Y', '1378298', 'A', 'C')}

-- Clinvar: {('X', '1407527', 'C', 'G')}
-- Calculated: {('X', '1407527', 'C', 'G'), ('Y', '1357527', 'C', 'G')}

-- Clinvar: {('X', '1413293', 'C', 'T')}
-- Calculated: {('X', '1413293', 'C', 'T'), ('Y', '1363293', 'C', 'T')}

-- Clinvar: {('X', '1404695', 'C', 'G')}
-- Calculated: {('Y', '1354695', 'C', 'G'), ('X', '1404695', 'C', 'G')}

-- Clinvar: {('X', '1422875', 'C', 'T')}
-- Calculated: {('X', '1422875', 'C', 'T'), ('Y', '1372875', 'C', 'T')}

-- Clinvar: {('X', '1414333', 'G', 'C')}
-- Calculated: {('Y', '1364333', 'G', 'C'), ('X', '1414333', 'G', 'C')}

ERROR:root:No vcf lines produced for variant 1057993, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1058611, even though variant is in clinvar vcf
-- Clinvar: {('X', '1413281', 'G', 'A')}
-- Calculated: {('Y', '1363281', 'G', 'A'), ('X', '1413281', 'G', 'A')}

ERROR:root:No vcf lines produced for variant 1060428, even though variant is in clinvar vcf
-- Clinvar: {('X', '1401639', 'C', 'T')}
-- Calculated: {('Y', '1351639', 'C', 'T'), ('X', '1401639', 'C', 'T')}

-- Clinvar: {('X', '1424406', 'G', 'C')}
-- Calculated: {('X', '1424406', 'G', 'C'), ('Y', '1374406', 'G', 'C')}

-- Clinvar: {('X', '1428317', 'C', 'T')}
-- Calculated: {('X', '1428317', 'C', 'T'), ('Y', '1378317', 'C', 'T')}

-- Clinvar: {('X', '1409371', 'C', 'A')}
-- Calculated: {('Y', '1359371', 'C', 'A'), ('X', '1409371', 'C', 'A')}

ERROR:root:No vcf lines produced for variant 1066944, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1067063, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1067336, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1067971, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1068154, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1068457, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1068645, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1068665, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1068666, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1068670, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1068740, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1068819, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1068820, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1068988, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1069116, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1069312, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1069494, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1069535, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1069873, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1069949, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1069959, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1069978, even though variant is in clinvar vcf
-- Clinvar: {('X', '1404731', 'A', 'AT')}
-- Calculated: {('X', '1404731', 'A', 'AT'), ('Y', '1354731', 'A', 'AT')}

ERROR:root:No vcf lines produced for variant 1070285, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1070408, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1070578, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1070642, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1070745, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1070820, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1071102, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1071123, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1071296, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1071341, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1071411, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1071488, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1071545, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1071617, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1071831, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1071843, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1071922, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1071940, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1072007, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1072309, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1072409, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1072491, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1072510, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1072558, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1072775, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1072831, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1072881, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1072907, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1073014, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1073106, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1073122, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1073328, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1073340, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1073537, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1073544, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1073551, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1073762, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1073777, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1074179, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1074331, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1074594, even though variant is in clinvar vcf
-- Clinvar: {('X', '1404676', 'C', 'T')}
-- Calculated: {('X', '1404676', 'C', 'T'), ('Y', '1354676', 'C', 'T')}

ERROR:root:No vcf lines produced for variant 1075043, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1075055, even though variant is in clinvar vcf
-- Clinvar: {('X', '1409301', 'AC', 'A')}
-- Calculated: {('Y', '1359301', 'AC', 'A'), ('X', '1409301', 'AC', 'A')}

ERROR:root:No vcf lines produced for variant 1075273, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1075774, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1075884, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1075928, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1076052, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1076186, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1076291, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1076369, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1076371, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1076528, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1076535, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1076584, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1076592, even though variant is in clinvar vcf
ERROR:root:No vcf lines produced for variant 1076965, even though variant is in clinvar vcf
-- Clinvar: {('X', '1404750', 'A', 'G')}
-- Calculated: {('X', '1404750', 'A', 'G'), ('Y', '1354750', 'A', 'G')}

-- Clinvar: {('X', '1422895', 'C', 'T')}
-- Calculated: {('X', '1422895', 'C', 'T'), ('Y', '1372895', 'C', 'T')}

-- Clinvar: {('X', '1419473', 'C', 'T')}
-- Calculated: {('X', '1419473', 'C', 'T'), ('Y', '1369473', 'C', 'T')}

-- Clinvar: {('X', '1414337', 'G', 'A')}
-- Calculated: {('Y', '1364337', 'G', 'A'), ('X', '1414337', 'G', 'A')}

-- Clinvar: {('X', '1424351', 'A', 'T')}
-- Calculated: {('Y', '1374351', 'A', 'T'), ('X', '1424351', 'A', 'T')}

-- Clinvar: {('X', '1404665', 'T', 'C')}
-- Calculated: {('X', '1404665', 'T', 'C'), ('Y', '1354665', 'T', 'C')}

-- Clinvar: {('X', '1401653', 'C', 'T')}
-- Calculated: {('Y', '1351653', 'C', 'T'), ('X', '1401653', 'C', 'T')}

-- Clinvar: {('X', '1409312', 'T', 'C')}
-- Calculated: {('Y', '1359312', 'T', 'C'), ('X', '1409312', 'T', 'C')}

-- Clinvar: {('X', '1413264', 'G', 'A')}
-- Calculated: {('X', '1413264', 'G', 'A'), ('Y', '1363264', 'G', 'A')}

-- Clinvar: {('X', '1424366', 'G', 'T')}
-- Calculated: {('Y', '1374366', 'G', 'T'), ('X', '1424366', 'G', 'T')}

-- Clinvar: {('X', '1424411', 'G', 'A')}
-- Calculated: {('X', '1424411', 'G', 'A'), ('Y', '1374411', 'G', 'A')}

-- Clinvar: {('X', '1407465', 'A', 'C')}
-- Calculated: {('Y', '1357465', 'A', 'C'), ('X', '1407465', 'A', 'C')}

-- Clinvar: {('X', '1407725', 'G', 'A')}
-- Calculated: {('X', '1407725', 'G', 'A'), ('Y', '1357725', 'G', 'A')}

ERROR:root:No vcf lines produced for variant 1129841, even though variant is in clinvar vcf
-- Clinvar: {('X', '1407755', 'G', 'A')}
-- Calculated: {('X', '1407755', 'G', 'A'), ('Y', '1357755', 'G', 'A')}

-- Clinvar: {('X', '1409281', 'T', 'C')}
-- Calculated: {('X', '1409281', 'T', 'C'), ('Y', '1359281', 'T', 'C')}

-- Clinvar: {('X', '1413315', 'G', 'A')}
-- Calculated: {('X', '1413315', 'G', 'A'), ('Y', '1363315', 'G', 'A')}

-- Clinvar: {('X', '1419526', 'G', 'A')}
-- Calculated: {('Y', '1369526', 'G', 'A'), ('X', '1419526', 'G', 'A')}

-- Clinvar: {('X', '1401611', 'G', 'T')}
-- Calculated: {('X', '1401611', 'G', 'T'), ('Y', '1351611', 'G', 'T')}

-- Clinvar: {('X', '1419428', 'C', 'T')}
-- Calculated: {('Y', '1369428', 'C', 'T'), ('X', '1419428', 'C', 'T')}

-- Clinvar: {('X', '1404810', 'C', 'G')}
-- Calculated: {('X', '1404810', 'C', 'G'), ('Y', '1354810', 'C', 'G')}

-- Clinvar: {('X', '1409341', 'C', 'T')}
-- Calculated: {('Y', '1359341', 'C', 'T'), ('X', '1409341', 'C', 'T')}

-- Clinvar: {('X', '1404681', 'A', 'G')}
-- Calculated: {('X', '1404681', 'A', 'G'), ('Y', '1354681', 'A', 'G')}

-- Clinvar: {('X', '1407796', 'CAT', 'C')}
-- Calculated: {('X', '1407796', 'CAT', 'C'), ('Y', '1357796', 'CAT', 'C')}

-- Clinvar: {('X', '1404832', 'T', 'G')}
-- Calculated: {('X', '1404832', 'T', 'G'), ('Y', '1354832', 'T', 'G')}

-- Clinvar: {('X', '1424437', 'G', 'A')}
-- Calculated: {('X', '1424437', 'G', 'A'), ('Y', '1374437', 'G', 'A')}

ERROR:root:No vcf lines produced for variant 1166712, even though variant is in clinvar vcf
-- Clinvar: {('X', '1409420', 'G', 'T')}
-- Calculated: {('X', '1409420', 'G', 'T'), ('Y', '1359420', 'G', 'T')}

-- Clinvar: {('X', '1413267', 'G', 'A')}
-- Calculated: {('Y', '1363267', 'G', 'A'), ('X', '1413267', 'G', 'A')}

-- Clinvar: {('X', '1407701', 'G', 'A')}
-- Calculated: {('Y', '1357701', 'G', 'A'), ('X', '1407701', 'G', 'A')}

-- Clinvar: {('X', '619504', 'CT', 'C')}
-- Calculated: {('Y', '569504', 'CT', 'C'), ('X', '619504', 'CT', 'C')}

-- Clinvar: {('X', '1414225', 'C', 'T')}
-- Calculated: {('X', '1414225', 'C', 'T'), ('Y', '1364225', 'C', 'T')}

-- Clinvar: {('X', '1408026', 'A', 'G')}
-- Calculated: {('Y', '1358026', 'A', 'G'), ('X', '1408026', 'A', 'G')}

-- Clinvar: {('X', '1404964', 'A', 'G')}
-- Calculated: {('X', '1404964', 'A', 'G'), ('Y', '1354964', 'A', 'G')}

-- Clinvar: {('X', '591729', 'AT', 'A')}
-- Calculated: {('X', '591729', 'AT', 'A'), ('Y', '541729', 'AT', 'A')}

-- Clinvar: {('X', '1407099', 'G', 'A')}
-- Calculated: {('X', '1407099', 'G', 'A'), ('Y', '1357099', 'G', 'A')}

-- Clinvar: {('X', '1428646', 'C', 'T')}
-- Calculated: {('X', '1428646', 'C', 'T'), ('Y', '1378646', 'C', 'T')}

-- Clinvar: {('X', '1428173', 'A', 'G')}
-- Calculated: {('Y', '1378173', 'A', 'G'), ('X', '1428173', 'A', 'G')}

-- Clinvar: {('X', '1413074', 'C', 'G')}
-- Calculated: {('Y', '1363074', 'C', 'G'), ('X', '1413074', 'C', 'G')}

-- Clinvar: {('X', '595370', 'G', 'C')}
-- Calculated: {('X', '595370', 'G', 'C'), ('Y', '545370', 'G', 'C')}

-- Clinvar: {('X', '1428516', 'A', 'G')}
-- Calculated: {('X', '1428516', 'A', 'G'), ('Y', '1378516', 'A', 'G')}

-- Clinvar: {('X', '1419625', 'C', 'T')}
-- Calculated: {('X', '1419625', 'C', 'T'), ('Y', '1369625', 'C', 'T')}

-- Clinvar: {('X', '1401790', 'C', 'G')}
-- Calculated: {('Y', '1351790', 'C', 'G'), ('X', '1401790', 'C', 'G')}

-- Clinvar: {('X', '1407585', 'C', 'T')}
-- Calculated: {('Y', '1357585', 'C', 'T'), ('X', '1407585', 'C', 'T')}

-- Clinvar: {('X', '1428258', 'G', 'A')}
-- Calculated: {('X', '1428258', 'G', 'A'), ('Y', '1378258', 'G', 'A')}

-- Clinvar: {('X', '1404636', 'G', 'A')}
-- Calculated: {('X', '1404636', 'G', 'A'), ('Y', '1354636', 'G', 'A')}

-- Number of variants: 993882
-- Number of ClinVar variation ids: 993836
-- Number of variants with warnings: 1073
-- Number of variants in output not in official ClinVar VCF: 78
-- Variants in official ClinVar VCF not in output: {'1068666', '1074179', '1073777', '1076186', '1068988', '1069535', '1076291', '1073122', '1060428', '1058611', '1076584', '1057993', '1073328', '1072907', '1067336', '1071341', '1066944', '1071940', '1074594', '1071922', '1069116', '1069949', '1068154', '1067971', '982521', '1072558', '1072510', '1072775', '1071123', '1071843', '1071296', '1166712', '1071617', '1069873', '1069312', '430873', '1071831', '1076369', '1025614', '1072007', '1068819', '1070745', '1075043', '1068820', '1071545', '1025617', '1002444', '1075273', '1070642', '1070408', '1073544', '1071102', '1068665', '1072409', '1076592', '1068740', '1075884', '1073537', '1072831', '1074331', '1068670', '1076535', '1075055', '1071488', '1069978', '1073340', '1068645', '1073762', '1075774', '999567', '1023355', '1014000', '1072309', '1037083', '1071411', '1076528', '1073106', '1070820', '1073551', '1076965', '1075928', '1069494', '1072881', '870641', '1076052', '1073014', '1076371', '1068457', '1067063', '1072491', '1016714', '1070578', '1070285', '1129841', '1069959'}
-- Number of duplicated positions: 26
-- Number of variants with WARN_FAILED_TO_CALCULATE_POSITION: 616
-- Number of variants with WARN_VARIANT_ID_NOT_IN_CLINVAR_VCF: 78
-- Number of variants with WARN_MULTIPLE_POSITIONS: 69
-- Number of variants with WARN_CLINVAR_VCF_CLNSIG_REVSTAT_MISMATCH: 14
-- Number of variants with WARN_CALCULATED_POSITION_MISMATCH: 359
(base) [yvans@focus ella-anno]$
Edited Aug 30, 2021 by Øyvind Evju
Update clinvar version to 20210826

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