Resolve "Update HGMD to version 2023.2"

Description

Dataset updated/created:

Dataset version:

• Generated data has been validated (specify below)
• Versioning follows previous versioning pattern
• Data has been uploaded to DigitalOcean

Notes to reviewer

Validation of data

• Number of entries is reasonable: 410513 lines vs 373144 previously
• File(s) is/are not truncated
• File size(s) is/are reasonable: 16M vs 14M previously

230727 09:50:13 mysqld_safe Logging to syslog.
230727 09:50:13 mysqld_safe Starting mariadbd daemon with databases from /var/lib/mysql
2023-07-27 09:50:14,339 - __main__ - INFO - Generating dataset hgmd
2023-07-27 09:50:14,339 - __main__ - INFO - Running: HGMD_VERSION=2023.2 /anno/anno-targets-scripts/hgmd.sh
2023-07-27 09:55:05,426 - __main__ - INFO - Running: mv hgmd_2023.2_norm.vcf.gz* /anno/data/variantDBs/HGMD
2023-07-27 09:55:05,451 - __main__ - INFO - Running: mv hgmd_2023.2_pubmed_ids.txt /anno/data/variantDBs/HGMD
2023-07-27 09:55:05.525333 - Finished hashing hgmd_2023.2_norm.vcf.gz 1/3 files (33.33%)
2023-07-27 09:55:05.526380 - Finished hashing hgmd_2023.2_norm.vcf.gz.tbi 2/3 files (66.67%)
2023-07-27 09:55:05.526638 - Finished hashing hgmd_2023.2_pubmed_ids.txt 3/3 files (100.00%)
2023-07-27 09:55:05,541 - __main__ - INFO - Not updating /anno/data/vcfanno_config.toml for dataset hgmd; entry/entries unchanged.
2023-07-27 09:55:05,543 - __main__ - INFO - Updated  /anno/data/sources.json for hgmd (version: 2023.2)
make[1]: Leaving directory '/storage/anno-targets'

Closes #71 (closed)