Commits · master · Simon H. Tausch / HiLive · GitLab

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Dec 05, 2017
- Fixed that ALL mode was not working. · 133292b5
  Lokat authored 7 years ago
  
  View commits for tag v1.1 v1.1
  
  133292b5
- Changed mimimum number of output threads to 1 for hilive-out executable · f71d52a6
  Lokat authored 7 years ago
  
  f71d52a6
Nov 30, 2017
- Store and report the full quality of base calls. · 5bf1d880
  Lokat authored 7 years ago
  
  5bf1d880
Nov 16, 2017
- Changed version to 1.1 in CMakeLists. · 73158995
  Lokat authored 7 years ago
  
  73158995
- Hotfix: Fixed argument parsing from the RunInfo.xml. · a933f087
  Lokat authored 7 years ago
  
  a933f087
Nov 15, 2017
- CHANGELOG and version declaration for v1.1 · 246a99c7
  Lokat authored 7 years ago
  
  246a99c7
- Merge branch 'threaded_output' into development. This provides multithreaded... · 25b1fa01
  Lokat authored 7 years ago
  25b1fa01
- Merge branch 'master' into development for branch sync. · d90ecee8
  Lokat authored 7 years ago
  
  d90ecee8
- Block output threads via a block_guard to prevent wrong counting of used threads. · 4d437dd7
  Lokat authored 7 years ago
  
  4d437dd7
Nov 09, 2017
- Open BFOs only when the first tile is written. Close them when the last tile... · d5234a68
  Lokat authored 7 years ago
  d5234a68
Nov 08, 2017
- Bugfix: Fixed counter of writing threads · 12c8b0bd
  Lokat authored 7 years ago
  
  12c8b0bd
- Added UNIQUE alignment-mode. · c4f2a79b
  Lokat authored 7 years ago
  
  c4f2a79b
- Bugfixes in threaded output (EOF marker, wrong barcodes before first barcode... · ea246e84
  Lokat authored 7 years ago
  ea246e84
- Implemented global file locker to prevent concurrency in file access.... · 7008296c
  Lokat authored 7 years ago
  7008296c
Nov 06, 2017
- Changed --keep-files to declare specified cycles, added --keep-all-files and... · 788629fb
  Lokat authored 7 years ago
  788629fb
Nov 03, 2017
- Write output only after the next cycle was already finished to prevent file... · b0889186
  Lokat authored 7 years ago
  b0889186
- Working version of threaded output for both executables. · 30f62f3b
  Lokat authored 7 years ago
  
  30f62f3b
Oct 23, 2017
- First running version of parallelized output. · aee5f653
  Lokat authored 7 years ago
  
  aee5f653
Sep 05, 2017
- Filter by alignment mode in intermediate output cycles. · 4c5495d8
  Lokat authored 7 years ago
  
  4c5495d8
Aug 23, 2017
- Merge branch 'development' · 16204b61
  Lokat authored 7 years ago
  
  16204b61
- Changed wrong changelog entry or version 0.3 · 639f0700
  Lokat authored 7 years ago
  
  639f0700
- Added changelog · 91fb16bb
  Lokat authored 7 years ago
  
  91fb16bb
- Hotfix: Removed error when no temp directory is set. Change default values of temp and out. · 8dfb2d6e
  Lokat authored 7 years ago
  
  8dfb2d6e
Aug 21, 2017
- Resolved merge conflict in README. · c41ec347
  Lokat authored 7 years ago
  
  View commits for tag v1.0 v1.0
  
  c41ec347
- Updated help (positional arguments first) and output of hilive-out. · 2c41ed96
  Lokat authored 7 years ago
  
  2c41ed96
- Merge branch 'development' of https://gitlab.com/SimonHTausch/HiLive into development · 4ccf9af1
  Lokat authored 7 years ago
  
  4ccf9af1
- Deleted deprecated debug.cpp · 76260361
  Lokat authored 7 years ago
  
  76260361
- Update CONTRIBUTORS · b43e5f66
  Lokat authored 7 years ago
  
  b43e5f66
- Update LICENSE · b05b3784
  Lokat authored 7 years ago
  
  b05b3784
Aug 18, 2017
- Improved documentation of definitions. · d9f3a97d
  Lokat authored 7 years ago
  
  d9f3a97d
- Removed kindex dependency from tools. · 54328787
  Lokat authored 7 years ago
  
  54328787
- Some additional documentation in tools. · 5b476511
  Lokat authored 7 years ago
  
  5b476511
- Added min-as-ratio to settings XML file. · a098c386
  Lokat authored 7 years ago
  
  a098c386
- Added --min-as-ratio to filter output by an AS:i score relative to the current read length · ff08c962
  Lokat authored 7 years ago
  
  ff08c962
- Updated CMakeLists and Readme · 553be42b
  Lokat authored 7 years ago
  
  553be42b
- Changed output file names for the last cycle. · 35bb8d52
  Lokat authored 7 years ago
  
  35bb8d52
- Some code clean-up in alignment output. · e875859f
  Lokat authored 7 years ago
  
  e875859f
Aug 17, 2017
- Removed samtools dependency · ec340e9b
  Lokat authored 7 years ago
  
  ec340e9b
- Cleaned up executables. · 7eb39f91
  Lokat authored 7 years ago
  
  7eb39f91
Aug 16, 2017
- Real-time output: Use temp filename for writing. · 0b6db121
  Lokat authored 7 years ago
  
  0b6db121