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Restricting phq_init to selected atoms

Pietro Delugas requested to merge pietrodelugas/q-e:phonons_mr4 into develop

This M.R. restricts part of phq_init calculations only to the atoms selected using the nat_todo input option.

The M.R. does not affect the start_irr:last_irr modality.

Parts that have been restricted so far are:

  • compute_nldyn
  • dvanqq
  • d2ionq
  • drho and drhous

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