MC-PDFT Cleanup (Part 2)

Remove more unused subroutines, variables, and logic branches. These also include variables/logic branches that do not make sense for MC-PDFT (such as CI iteration thresholds), all of which are remnants of the RASSCF module that was never fully dis-entangled from MC-PDFT.

Also, push all of the mcpdft output vars (like silent, terse, etc) to its own fortran module file. Acts similar to he CASPT2_output.F90 file.

Move most of the multi-state PDFT stuff into its own subroutine and out of the main mcpdft.f loop for readibility.

• Documentation updated or not needed.
• Test created or not needed.
• Attribution in source files and CONTRIBUTORS.md updated if necessary.