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Fix for 2-step MCLR run

Liviu Ungur requested to merge fix_mclr into master

This MR fixes a newly introduced bug in the 2-step MCLR run. The issue was related to missing some data for the second run, namely INT2 array.

  • Documentation updated or not needed.
  • Test created or not needed.
  • Attribution in source files and CONTRIBUTORS.md updated if necessary.

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