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Convert motifs to regular expressions using IUPAC ambiguity codes

Afif Elghraoui requested to merge 2-inexact-motifs into master

I also add support for amino acid sequences since the logic is very similar.

Still to do:

  • Use regular expression matching in comparisons
  • Ensure that the motif lengths are determined properly after regexification
  • Output the motif names as they were provided in the input (not transformed)

Closes #2 (closed)

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