science/py-pysal: Update to 2.4.0

Changes:	https://github.com/pysal/pysal/releases

science/py-pysal/Makefile

 # Created by: Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
 
 PORTNAME=	pysal
-PORTVERSION=	2.3.0
+PORTVERSION=	2.4.0
 CATEGORIES=	science python
 MASTER_SITES=	CHEESESHOP
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
@@ -12,24 +12,25 @@ COMMENT=	Cross-platform library of spatial analysis functions
 LICENSE=	BSD3CLAUSE
 LICENSE_FILE=	${WRKSRC}/LICENSE.txt
 
-RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}access>=1.1.1:science/py-access@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}esda>=2.3.1:science/py-esda@${PY_FLAVOR} \
+RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}access>=1.1.3:science/py-access@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}esda>=2.3.6:science/py-esda@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}giddy>=2.3.3:graphics/py-giddy@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}inequality>=1.0.0:science/py-inequality@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}libpysal>=4.3.0:science/py-libpysal@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}mapclassify>=2.3.0:graphics/py-mapclassify@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}mgwr>=2.1.1:graphics/py-mgwr@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}libpysal>=4.4.0:science/py-libpysal@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}mapclassify>=2.4.2:graphics/py-mapclassify@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}mgwr>=2.1.2:graphics/py-mgwr@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pointpats>=2.2.0:graphics/py-pointpats@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}dateutil>=0:devel/py-dateutil@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}segregation>=1.3.0:science/py-segregation@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}spaghetti>=1.5.0:science/py-spaghetti@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}spglm>=1.0.7:math/py-spglm@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}spint>=1.0.6:math/py-spint@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}segregation>=1.5.0:science/py-segregation@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}spaghetti>=1.5.6:science/py-spaghetti@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}spglm>=1.0.8:math/py-spglm@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}spint>=1.0.7:math/py-spint@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}splot>=1.1.3:math/py-splot@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}spreg>=1.1.1:math/py-spreg@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}spopt>=0.1.1:math/py-spopt@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}spreg>=1.2.2:math/py-spreg@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}spvcm>=0.3.0:math/py-spvcm@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}tobler>=0.3.1:science/py-tobler@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}urllib3>=0,1:net/py-urllib3@${PY_FLAVOR}
+		${PYTHON_PKGNAMEPREFIX}tobler>=0.6.0:science/py-tobler@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}urllib3>=1.26,1:net/py-urllib3@${PY_FLAVOR}
 
 USES=		python:3.7+
 USE_PYTHON=	autoplist concurrent distutils

science/py-pysal/distinfo

-TIMESTAMP = 1612101618
-SHA256 (pysal-2.3.0.tar.gz) = 6f15a1432ff6805edd53ba6a5444f9af4ba2acd8a78f8f678c8bc09ffb0debe1
-SIZE (pysal-2.3.0.tar.gz) = 108511
+TIMESTAMP = 1628103154
+SHA256 (pysal-2.4.0.tar.gz) = 8994c008a70b607a357d972421feaad88fab95bdf436c07625fe2b62b8b32135
+SIZE (pysal-2.4.0.tar.gz) = 20254

science/py-pysal/files/patch-requirements.txt

---- requirements.txt.orig	2020-07-29 02:30:21 UTC
+--- requirements.txt.orig	2021-01-31 22:52:55 UTC
 +++ requirements.txt
-@@ -10,12 +10,9 @@ mgwr>=2.1.1
- spglm>=1.0.7
- spint>=1.0.6
- spreg>=1.1.1
--spvcm==0.3.0
-+spvcm>=0.3.0
- tobler>=0.3.1
- mapclassify>=2.3.0
+@@ -16,7 +16,4 @@ mapclassify>=2.4.2
  splot>=1.1.3
--urllib3<1.25
+ spopt>=0.1.1
+ urllib3>=1.26
 -python-dateutil<=2.8.0
 -pytest
 -pytest-cov
 -coverage
-\ No newline at end of file
-+urllib3
 +python-dateutil

science/py-pysal/files/patch-setup.py

---- setup.py.orig	2020-02-01 23:18:07 UTC
+--- setup.py.orig	2021-01-31 21:39:53 UTC
 +++ setup.py
-@@ -54,7 +54,7 @@ def setup_package():
+@@ -65,7 +65,7 @@ def setup_package():
          download_url='https://pypi.python.org/pypi/pysal',
          license='BSD',
          packages=find_packages(),