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Update all Python dependencies

James Ennis requested to merge jennis/update_python_deps into master

Description

When running the test suite I noticed two separate warnings:

  1. A UserWarning for /usr/lib64/python3.x/distutils/dist.py:274.
  2. A Deprecation warning for pluginbase.

When looking at the latest pluginbase release, I noticed that this deprecation issue was resolved, so I followed our contributing guidelines which resulted in updating all of our Python dependencies. I don't see any policy concerning when we should update all plugins and AFAICT this has not broken anything. So perhaps now is a good time to update.

Additionally, the two warnings no longer appear.

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