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Fix docker-compose-up-gen.sh; organize the compose files in a subdirectory

Marios Hadjimichael requested to merge marios/fix-docker-compose-up-gen into master

Description

The docker-compose-up-gen shell script for the stress tests was broken; it would return the "index" of the compose.yml option instead of the filename for use with docker-compose up -f <arg>, causing it to not work.

This MR fixes that and organizes the compose files in a subdirectories. Includes minor linting of the shell script.

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