FAIR data

A semantic, flexible research data management software

Simplifying the curation and sharing of biomedical research data and software according to applicable FAIR guidelines

slides: https://ifb-elixirfr.gitlab.io/training/fair-gaa/module-4-pipeline-et-conteneurisation

slides: https://ifb-elixirfr.gitlab.io/training/fair-gaa/module-3-gestion-des-donnees/ tutorial: https://ifb-elixirfr.gitlab.io/training/fair-gaa/module-3-gestion-des-donnees/tutorial.html

slides: https://ifb-elixirfr.gitlab.io/training/fair-gaa/module-1-introduction

slides: https://ifb-elixirfr.gitlab.io/training/fair-gaa/module-2-gestion-de-projet tutorial: https://ifb-elixirfr.gitlab.io/training/fair-gaa/module-2-gestion-de-projet/tutorial.html

This project describe lactate detection following CAR-T cells infusion.

Procedure facilitating the documentation and FAIR data sharing of a consolidated data set. Using a simple spreadsheet template, the program produces an SQLite database, with verified relations and an accompanying 'pdf' documentation, including the ER diagram

This project shows an example of how a collaborative collected FAIR dataset can be extended (using Merge Requests), curated (using automated testing), analyzed (using a Snakemake workflow), and visualized (using Python).